NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103900

Metagenome Family F103900

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103900
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 41 residues
Representative Sequence MSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Number of Associated Samples 80
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 59.41 %
% of genes near scaffold ends (potentially truncated) 28.71 %
% of genes from short scaffolds (< 2000 bps) 83.17 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (73.267 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(32.673 % of family members)
Environment Ontology (ENVO) Unclassified
(81.188 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(85.149 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 85.00%    β-sheet: 0.00%    Coil/Unstructured: 15.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF02609Exonuc_VII_S 8.00
PF03592Terminase_2 2.00
PF00145DNA_methylase 1.00
PF04851ResIII 1.00
PF03237Terminase_6N 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1722Exonuclease VII small subunitReplication, recombination and repair [L] 8.00
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 2.00
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.27 %
All OrganismsrootAll Organisms26.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10244045Not Available570Open in IMG/M
3300000115|DelMOSum2011_c10160887Not Available657Open in IMG/M
3300000116|DelMOSpr2010_c10016253Not Available3716Open in IMG/M
3300000116|DelMOSpr2010_c10089602All Organisms → Viruses → Predicted Viral1192Open in IMG/M
3300001450|JGI24006J15134_10011639All Organisms → cellular organisms → Bacteria4293Open in IMG/M
3300001450|JGI24006J15134_10077416All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1255Open in IMG/M
3300001460|JGI24003J15210_10007494All Organisms → cellular organisms → Bacteria4558Open in IMG/M
3300004097|Ga0055584_102209741Not Available560Open in IMG/M
3300004461|Ga0066223_1083169Not Available1260Open in IMG/M
3300004461|Ga0066223_1139932Not Available604Open in IMG/M
3300005346|Ga0074242_11218824All Organisms → Viruses → Predicted Viral2044Open in IMG/M
3300005512|Ga0074648_1002701All Organisms → cellular organisms → Bacteria15708Open in IMG/M
3300006025|Ga0075474_10020823All Organisms → cellular organisms → Bacteria2382Open in IMG/M
3300006029|Ga0075466_1001082All Organisms → cellular organisms → Bacteria10145Open in IMG/M
3300006164|Ga0075441_10073271All Organisms → Viruses → Predicted Viral1332Open in IMG/M
3300006164|Ga0075441_10351639Not Available535Open in IMG/M
3300006193|Ga0075445_10148811All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium843Open in IMG/M
3300006352|Ga0075448_10120274Not Available818Open in IMG/M
3300006735|Ga0098038_1062661Not Available1327Open in IMG/M
3300006754|Ga0098044_1133510Not Available1002Open in IMG/M
3300006754|Ga0098044_1275137Not Available648Open in IMG/M
3300006789|Ga0098054_1006704All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium4946Open in IMG/M
3300006793|Ga0098055_1406083Not Available504Open in IMG/M
3300006802|Ga0070749_10366617Not Available799Open in IMG/M
3300006802|Ga0070749_10626658Not Available579Open in IMG/M
3300006803|Ga0075467_10101818Not Available1708Open in IMG/M
3300006810|Ga0070754_10205328Not Available916Open in IMG/M
3300006810|Ga0070754_10278253Not Available757Open in IMG/M
3300006916|Ga0070750_10242777Not Available784Open in IMG/M
3300006916|Ga0070750_10325943Not Available652Open in IMG/M
3300006919|Ga0070746_10032081Not Available2822Open in IMG/M
3300006919|Ga0070746_10125825All Organisms → Viruses → Predicted Viral1263Open in IMG/M
3300006920|Ga0070748_1169890Not Available805Open in IMG/M
3300006920|Ga0070748_1185360All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium765Open in IMG/M
3300006928|Ga0098041_1017667All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2339Open in IMG/M
3300007276|Ga0070747_1285165Not Available569Open in IMG/M
3300007540|Ga0099847_1146923Not Available702Open in IMG/M
3300007542|Ga0099846_1264411Not Available595Open in IMG/M
3300008012|Ga0075480_10537389Not Available559Open in IMG/M
3300009000|Ga0102960_1196659Not Available720Open in IMG/M
3300009074|Ga0115549_1013523Not Available3462Open in IMG/M
3300009149|Ga0114918_10192526Not Available1189Open in IMG/M
3300009149|Ga0114918_10351722Not Available812Open in IMG/M
3300009172|Ga0114995_10327694Not Available842Open in IMG/M
3300009420|Ga0114994_10683741Not Available670Open in IMG/M
3300009433|Ga0115545_1056893Not Available1488Open in IMG/M
3300009433|Ga0115545_1234567Not Available619Open in IMG/M
3300009435|Ga0115546_1076352Not Available1245Open in IMG/M
3300009495|Ga0115571_1352370Not Available581Open in IMG/M
3300009529|Ga0114919_11044728Not Available549Open in IMG/M
3300009705|Ga0115000_10281174Not Available1080Open in IMG/M
3300009705|Ga0115000_10423312Not Available846Open in IMG/M
3300010153|Ga0098059_1094092Not Available1191Open in IMG/M
3300010153|Ga0098059_1094092Not Available1191Open in IMG/M
3300010155|Ga0098047_10035778All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.1978Open in IMG/M
3300017697|Ga0180120_10070867All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1546Open in IMG/M
3300017719|Ga0181390_1116560Not Available699Open in IMG/M
3300017721|Ga0181373_1009909Not Available1793Open in IMG/M
3300017729|Ga0181396_1082109Not Available652Open in IMG/M
3300017732|Ga0181415_1091346Not Available686Open in IMG/M
3300017743|Ga0181402_1188596Not Available514Open in IMG/M
3300017770|Ga0187217_1199576Not Available661Open in IMG/M
3300017963|Ga0180437_10097064All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2506Open in IMG/M
3300018080|Ga0180433_10507169Not Available916Open in IMG/M
3300019459|Ga0181562_10274042Not Available849Open in IMG/M
3300019765|Ga0194024_1078448Not Available745Open in IMG/M
3300020175|Ga0206124_10139982Not Available980Open in IMG/M
3300021375|Ga0213869_10257788Not Available760Open in IMG/M
3300021958|Ga0222718_10015189Not Available5508Open in IMG/M
3300021960|Ga0222715_10103856All Organisms → Viruses → Predicted Viral1830Open in IMG/M
3300022053|Ga0212030_1063655Not Available525Open in IMG/M
3300022065|Ga0212024_1105819Not Available501Open in IMG/M
3300022074|Ga0224906_1073287All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1049Open in IMG/M
3300022074|Ga0224906_1169164Not Available609Open in IMG/M
3300022169|Ga0196903_1028746Not Available660Open in IMG/M
3300022178|Ga0196887_1056141Not Available987Open in IMG/M
3300022178|Ga0196887_1080295Not Available764Open in IMG/M
3300024262|Ga0210003_1017367All Organisms → cellular organisms → Bacteria4519Open in IMG/M
3300025070|Ga0208667_1017626Not Available1445Open in IMG/M
3300025071|Ga0207896_1009858Not Available1714Open in IMG/M
3300025071|Ga0207896_1078686Not Available505Open in IMG/M
3300025079|Ga0207890_1014698All Organisms → Viruses → Predicted Viral1587Open in IMG/M
3300025108|Ga0208793_1177949Not Available545Open in IMG/M
3300025109|Ga0208553_1069788Not Available845Open in IMG/M
3300025112|Ga0209349_1157836Not Available606Open in IMG/M
3300025120|Ga0209535_1000792All Organisms → cellular organisms → Bacteria21964Open in IMG/M
3300025120|Ga0209535_1030368All Organisms → cellular organisms → Bacteria2565Open in IMG/M
3300025120|Ga0209535_1143379All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.767Open in IMG/M
3300025125|Ga0209644_1146491Not Available563Open in IMG/M
3300025137|Ga0209336_10118494All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.728Open in IMG/M
3300025168|Ga0209337_1342008Not Available517Open in IMG/M
3300025237|Ga0208031_1012866All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1140Open in IMG/M
3300025237|Ga0208031_1048928Not Available533Open in IMG/M
3300025266|Ga0208032_1078525Not Available684Open in IMG/M
3300027687|Ga0209710_1111184Not Available1060Open in IMG/M
3300027801|Ga0209091_10476375Not Available547Open in IMG/M
(restricted) 3300027861|Ga0233415_10081161Not Available1403Open in IMG/M
3300028125|Ga0256368_1052490Not Available716Open in IMG/M
3300028125|Ga0256368_1062206Not Available646Open in IMG/M
3300031637|Ga0302138_10133429Not Available868Open in IMG/M
3300032073|Ga0315315_10071910All Organisms → cellular organisms → Bacteria3209Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine32.67%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous21.78%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.93%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine4.95%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface3.96%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.96%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.96%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean2.97%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.98%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.98%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.98%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.98%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.99%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.99%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.99%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.99%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.99%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.99%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.99%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.99%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.99%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment0.99%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005346Saline sediment microbial community from Etoliko Lagoon, GreeceEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006193Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNAEnvironmentalOpen in IMG/M
3300006352Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025079Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025109Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025237Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)EnvironmentalOpen in IMG/M
3300025266Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031637Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1024404513300000101MarineMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
DelMOSum2011_1016088733300000115MarineMSDHRNEIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
DelMOSpr2010_1001625363300000116MarineMSNHRNQIILESLYQKYLDLGYENAEALELAAKEFEENSY*
DelMOSpr2010_1008960253300000116MarineMSDHRNQIILESLYQKYLDLGHEDADALELAQKEFVENSN*
JGI24006J15134_1001163913300001450MarineMKIIKRSQKITREDYMSSHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSY*
JGI24006J15134_1007741633300001450MarineMSDHRNQIILESLYQKYLDLGHEDADALELAAKEFEENSN*
JGI24003J15210_1000749433300001460MarineMSSHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSY*
Ga0055584_10220974123300004097Pelagic MarineMSDHRNQVILESLYQKYIDLGYEDAEAQELAQKEFVENSN*
Ga0066223_108316953300004461MarineMSSHRNQIILESLYQKYLDLGYENAEALELAAKEFEENSY*
Ga0066223_113993213300004461MarineMSDHRNQIILESLYQKYLDLGYENAEALELAAKEFEENSY*
Ga0074242_1121882433300005346Saline Water And SedimentMSNHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0074648_1002701263300005512Saline Water And SedimentMSNHRNEIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0075474_1002082393300006025AqueousMSDHKNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0075466_1001082213300006029AqueousMSDHRNQIILESLYQKYLDLGHEDAEALELAAKEFEENSN*
Ga0075441_1007327153300006164MarineMSNHRNESSLESLYQKYIDLGHEDAEAQELAAKEFEENSN*
Ga0075441_1035163913300006164MarineMSNHRNESSLESLYQKYLDLGHEDAEAQELAAKEFEENSN*
Ga0075445_1014881143300006193MarineHRNESSLESLYQKYLDLGHEDAEAQELAAKEFEENSN*
Ga0075448_1012027433300006352MarineMSSHRNESSLESLYQKYLDLGHEDAEAQELAAKEFEENSN*
Ga0098038_106266123300006735MarineMSDHRNQIILESLYHKYIELGYEDKEAQELAAKEFEENSN*
Ga0098044_113351033300006754MarineMSDHTNQAILEFLYQKYIDLGYENAEALELAAKEFEENSN*
Ga0098044_127513733300006754MarineMSDHRNQIILESLYHKYIELGYEDKEAQELAAKEFEEISN*
Ga0098054_1006704113300006789MarineMSDHRNQIVLESLYHKYIELGYEDKEAQELAAKEFEENSN*
Ga0098055_140608313300006793MarineMSDHRNQVILESLYKKYIDLGYEDAEAQELAQKEFVENSN*
Ga0070749_1036661743300006802AqueousMSSHRNQIILESLYQKYIDLGYEDAEAQELAQKEFVENSN*
Ga0070749_1062665833300006802AqueousMSDHRNQVILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0075467_1010181833300006803AqueousMTKIITRSQKITREDYMSSHRNQIILESLYQKYLDLGYENAEALELAAKEFEENSY*
Ga0070754_1020532843300006810AqueousMSDHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSN*
Ga0070754_1027825343300006810AqueousMSNHRNQIILESLYQKYIDLGYEDAEAQELAAKEFE
Ga0070750_1024277713300006916AqueousHRNQIILESLYQKYLDLGHENAEALELAAKEFEENSY*
Ga0070750_1032594313300006916AqueousNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0070746_1003208143300006919AqueousMSNHRNQIILESLYQKYLDLGHENAEALELAAKEFEENSY*
Ga0070746_1012582583300006919AqueousMSDHRNQIILESLYQKYIDLGHEDADALELAQKEFVENSN*
Ga0070748_116989013300006920AqueousMTKIITRSQKITREDYMSSHRNQIILESLYQKYLDLGYENAEALELAAK
Ga0070748_118536043300006920AqueousMSDHRNQINLESLYQKDIDLGYEGAEAQELAAKEFEENSN*
Ga0098041_101766763300006928MarineMSDHRNQIILESLYQKYIDLGYEDAEAQELAQKEFVENSN*
Ga0070747_128516533300007276AqueousMSSHRNQIILESLYQKYWDLGYENAEALELAAKEFEENSY*
Ga0099847_114692313300007540AqueousMIDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0099846_126441113300007542AqueousMSNHRNEIILESLYQKYIDLGYEDAEAQELAAKEFEENS
Ga0075480_1053738933300008012AqueousMSSHRNQIILESLYQKYIDLGYEDAEKQELAQKEFVENSN*
Ga0102960_119665933300009000Pond WaterMSNHRNQIILESLYQKYIDLGYEDAEAQELVAKEFEENSN*
Ga0115549_1013523103300009074Pelagic MarineMSDHRNQVILESLYQKYIDPGYEDAEAQELAQKEFVENSN*
Ga0114918_1019252643300009149Deep SubsurfaceMSNHRNQVILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0114918_1035172233300009149Deep SubsurfaceMSSHRNQIILESLYQKYLDLGHENAEALELAAKEFEENSN*
Ga0114995_1032769413300009172MarineQKIFTTKIITRSQKITREDYMSDHRNQIVLESLYQKYIDLGHEDAEALELAAKEFEENSN
Ga0114994_1068374123300009420MarineMSDHRNQIVLESLYQKYIDLGHEDAEALELAAKEFEENSN*
Ga0115545_105689323300009433Pelagic MarineMSDHRNQIILESLYHKYIELGYEDAEAQELAAKEFEENSN*
Ga0115545_123456723300009433Pelagic MarineMSDHRNQIILESLYQKYIDLGYEDAEAQELAVKEFEENSN*
Ga0115546_107635213300009435Pelagic MarineNEIILESLYQKYIDLGYEDAEAQELAAKEFEENSN*
Ga0115571_135237023300009495Pelagic MarineMSDHRNQIILESLYHKYIELGYEDKKAQELAAKEFEENSN*
Ga0114919_1104472823300009529Deep SubsurfaceMRDHRNQIILESLYQKYIEHGYEDAEAQELAAKEFEENSN*
Ga0115000_1028117413300009705MarineMSDHKNQIILESLYQKYLDLGHEDAEALELAAKEFEENSN*
Ga0115000_1042331243300009705MarineSDHRNQIILESLYQKYLDLGHEDADALELAQKEFVENSN*
Ga0098059_109409213300010153MarineMSDHTNQAILESLYQKYIDLGYEDADALELAAKEFEENSN*
Ga0098059_109409233300010153MarineMSDHTNQAILEFLYQKYIDLGYEDADALELAAKEFEENSN*
Ga0098047_1003577853300010155MarineMSDHTNQVILESLYQKYIDLGYEDAEALELAAKEFEENSN*
Ga0180120_1007086753300017697Freshwater To Marine Saline GradientMSDHRNQIILESLYHKYIELGYEDKEAQELAAKECEENSN
Ga0181390_111656023300017719SeawaterMSNHRNQVILESLYQKYIDLGYEDAEAQELAQKEFVENSN
Ga0181373_100990963300017721MarineMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFE
Ga0181396_108210913300017729SeawaterQMSDHRNQIILESLYHKYIELGYEDKEAQELAAKEFEENSN
Ga0181415_109134613300017732SeawaterRRLLQKNVEVAIMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0181402_118859633300017743SeawaterMSNHRNQVILESLYQKYIDLGYEDEEAQELAQKEFVENSN
Ga0187217_119957613300017770SeawaterNQVILESLYQKYIDLGYEDAEAQELAQKEFVENSN
Ga0180437_1009706493300017963Hypersaline Lake SedimentMSNHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0180433_1050716943300018080Hypersaline Lake SedimentMSDHRNQIILESLYQKYIDLGYEDAEAQELAVKEFEENSN
Ga0181562_1027404243300019459Salt MarshMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0194024_107844823300019765FreshwaterMSDHRNEIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0206124_1013998223300020175SeawaterMSDHRNQVILESLYQKYIDLGYEDAEAQELAQKEFVENSN
Ga0213869_1025778833300021375SeawaterMSNHRNEIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0222718_10015189163300021958Estuarine WaterMSDHRNEIILESLYQKYIDLGYEDSEAQELAAKEFEENSN
Ga0222715_1010385613300021960Estuarine WaterEIAIMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0212030_106365523300022053AqueousMSDHKNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0212024_110581913300022065AqueousNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0224906_107328733300022074SeawaterMSDHRNQVILESLYQKYINLGYEDAEAQELAQKEFVENSN
Ga0224906_116916423300022074SeawaterMSDHRNQIILESLYHKYIELGYEDAEAQELAAKEFEENSN
Ga0196903_102874613300022169AqueousNVEIAIMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0196887_105614113300022178AqueousDYMSSHRNQIILESLYQKYLDLGYENAEALELAAKEFEENSY
Ga0196887_108029513300022178AqueousMSSHRNQIILESLYQKYLDLGYENAEALELAAKEFEENSY
Ga0210003_101736763300024262Deep SubsurfaceMSNHRNQVILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0208667_101762623300025070MarineMSDHRNQIILESLYHKYIELGYEDKEAQELAAKEFEENSN
Ga0207896_100985863300025071MarineMSDHRNQIILESLYQKYLDLGYENAEALELAAKEFEENSY
Ga0207896_107868613300025071MarineRSQKIAREDYMSDHRNQIILESLYQKYLDLGHEDAEALELAAKEFEENSN
Ga0207890_101469813300025079MarineDYMSDHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSN
Ga0208793_117794923300025108MarineMSDHTNQAILEFLYQKYIDLGYENAEALELAAKEFEENSN
Ga0208553_106978853300025109MarineMSDHTNQVILESLYQKYIDLGYEDAEALELAAKEFEENSN
Ga0209349_115783633300025112MarineMSDHTNQVILEYLYQKYIDLGHEDAEAQELAAKEFEENSN
Ga0209535_100079293300025120MarineMSSHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSY
Ga0209535_103036833300025120MarineMSDHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSN
Ga0209535_114337913300025120MarineMSDHRNQIILESLYQKYLDLGHENADALELAAKEFEENSN
Ga0209644_114649113300025125MarineMSDHRNQVVLEYLYQKYIDLGHEDAEALELAAKEFEENSN
Ga0209336_1011849433300025137MarineMSDHRNQIILESLYQKYLDLGHEDADALELAAKEFEENSN
Ga0209337_134200833300025168MarineMSDHRNQIILESLYQKYLDLGHENAEALELAAKEFE
Ga0208031_101286643300025237Deep OceanMSNHRNESSLESLYQKYIDLGHEDAEAQELAAKEFEENSN
Ga0208031_104892813300025237Deep OceanRGRTMSNHRNESSLESLYQKYLDLGHEDAEAQELAAKEFEENSN
Ga0208032_107852533300025266Deep OceanMSNHRNESSLESLYQKYLDLGHEDAEAQELAAKEFEENSN
Ga0209710_111118423300027687MarineMSDHRNQIILESLYQKYLDLGHENAEALELAAKEFEENSN
Ga0209091_1047637523300027801MarineMKIITRSQKITREDYMSDHRNQIILESLYQKYLDLGHEDAEALELAAKEFEENSN
(restricted) Ga0233415_1008116143300027861SeawaterMSDHRNQIILESLYQKYIDLGYEDKEAQELAAKEFEENSN
Ga0256368_105249023300028125Sea-Ice BrineMSDHRNQIILESLYHKYIELGHDDKEALELATKEFEENSY
Ga0256368_106220613300028125Sea-Ice BrineELNMSDHRNQIILESLYQKYLDLGHEDADALELAQKEFVENSN
Ga0302138_1013342943300031637MarineREDYMSDHRNQIILESLYQKYIDLGHEDAEALELAAKEFEENSN
Ga0315315_1007191013300032073SeawaterNIKMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN


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