Scaffold Ga0315315_10002152

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10002152
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18034
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025412	Metagenome	202	Y
F028650	Metagenome	191	N
F034931	Metagenome	173	N
F036312	Metagenome	170	Y
F059442	Metagenome	134	Y
F076108	Metagenome	118	N
F076111	Metagenome	118	N
F079336	Metagenome	116	Y
F100003	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_100021521	F028650	N/A	MRIPKSLKEVLVKDYIQINKIRSAEYDNPFTRTIDLLCIFNDREDVLKCKPSELAIDLSHLLVEPSRTLKQYFTINGKRYGIVNHINDLEAGQYMSFTTYLKGFADNPNVHIEQMPDILASVIFPVDKNNKVMAIEPSYFRNLAEDIRNTVTIDEIYGVAVFFCNLSASLTKCTQDYLSQKIENMTEQSKNAILEVAKDLQKDGDGLPHSIIS
Ga0315315_1000215216	F076111	AGGA	MTLEQLTTKLELNILIERVLEKNGAYITPLSKEDALKGITLSKQTKDTLNTLKSALEQINQLYDLSIMYSKELKNKDSQIYKLSVENSKLRTRANLADQRTNNITEYIELHKNKTT
Ga0315315_1000215222	F059442	N/A	MRKEDRFKPYVYKVYNSRGNLEEYSRYYYTKKEAVEWYNTQGKWLEKHFNRKLILIDTHLNLFTNVSSTLFNR
Ga0315315_1000215224	F079336	N/A	METILRTELETADKRIIVLESTIETYKRIVASLDERLELMEKSHAFELENYYTKNK
Ga0315315_1000215226	F036312	N/A	MKRKLTHSLHEVQKVNKELYEVFTTDFWDNGTYTTKDISHHATEREAIEQKLINKHKNLN
Ga0315315_1000215228	F076108	N/A	MTRVELSDDEIEYSTYFPIQDPHDIMYSFEEMVRMYTNADLEVDNYILERAKEIKIKNSN
Ga0315315_1000215236	F034931	N/A	MTNSGELIAINGVVIINDTVEKVLNADSYYVAEDTVIARIEVNGDTATDVLASYITTPATGVKAGVLITPQRGDYFSAITLTSGSVVAILK
Ga0315315_100021525	F100003	N/A	MKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNGKRIRRNGLQ
Ga0315315_100021527	F025412	N/A	MNYRELKWGALKSYATKLGIKTKGMTKQVLIEWLDAMPDVAHGIEQLEPFKGIKQHHPLFDEIKDYLPYLKAYKKLNAVSRDPKINKAIATLFVKYIETQKNAKINIGCGRCVSSYYQRMIANYNKLADEYGGERI