NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F079336

Metagenome Family F079336

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079336
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 55 residues
Representative Sequence METILRTELETADKRIIVLESTIETYKRIVAALDERIELMEKSHKFELENYYTKNK
Number of Associated Samples 79
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 23.28 %
% of genes from short scaffolds (< 2000 bps) 77.59 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.897 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater
(15.517 % of family members)
Environment Ontology (ENVO) Unclassified
(64.655 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(53.448 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 63.10%    β-sheet: 0.00%    Coil/Unstructured: 36.90%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.60
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF04404ERF 64.66
PF08299Bac_DnaA_C 3.45
PF13539Peptidase_M15_4 2.59
PF03869Arc 1.72
PF12843QSregVF_b 0.86
PF03796DnaB_C 0.86
PF11325DUF3127 0.86
PF13385Laminin_G_3 0.86
PF03592Terminase_2 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 3.45
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 0.86
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 0.86
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 0.86


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A56.90 %
All OrganismsrootAll Organisms43.10 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10066909All Organisms → Viruses → Predicted Viral1683Open in IMG/M
3300000115|DelMOSum2011_c10096086Not Available983Open in IMG/M
3300000116|DelMOSpr2010_c10266184Not Available515Open in IMG/M
3300000117|DelMOWin2010_c10066494All Organisms → Viruses → Predicted Viral1479Open in IMG/M
3300000117|DelMOWin2010_c10115831All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium947Open in IMG/M
3300001354|JGI20155J14468_10200479Not Available601Open in IMG/M
3300001355|JGI20158J14315_10119175Not Available862Open in IMG/M
3300001450|JGI24006J15134_10013498All Organisms → Viruses → Predicted Viral3921Open in IMG/M
3300001450|JGI24006J15134_10199582Not Available611Open in IMG/M
3300003142|Ga0052242_1018447Not Available890Open in IMG/M
3300004278|Ga0066609_10153872Not Available741Open in IMG/M
3300005939|Ga0075123_10321856All Organisms → cellular organisms → Bacteria → Proteobacteria566Open in IMG/M
3300006750|Ga0098058_1051439All Organisms → Viruses → Predicted Viral1162Open in IMG/M
3300006793|Ga0098055_1076589All Organisms → Viruses → Predicted Viral1319Open in IMG/M
3300006920|Ga0070748_1001424Not Available11179Open in IMG/M
3300006920|Ga0070748_1056526All Organisms → Viruses → Predicted Viral1548Open in IMG/M
3300006920|Ga0070748_1102313All Organisms → Viruses → Predicted Viral1091Open in IMG/M
3300006947|Ga0075444_10301367All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300007540|Ga0099847_1051683All Organisms → Viruses → Predicted Viral1293Open in IMG/M
3300008470|Ga0115371_10102926Not Available20016Open in IMG/M
3300009050|Ga0102909_1181506Not Available504Open in IMG/M
3300009071|Ga0115566_10028346All Organisms → Viruses → Predicted Viral4004Open in IMG/M
3300009071|Ga0115566_10198992All Organisms → Viruses → Predicted Viral1224Open in IMG/M
3300009077|Ga0115552_1086392All Organisms → Viruses → Predicted Viral1372Open in IMG/M
3300009136|Ga0118735_10163285Not Available717Open in IMG/M
3300009142|Ga0102885_1178167All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.524Open in IMG/M
3300009149|Ga0114918_10183835Not Available1224Open in IMG/M
3300009149|Ga0114918_10188803Not Available1204Open in IMG/M
3300009149|Ga0114918_10386276Not Available765Open in IMG/M
3300009149|Ga0114918_10556595Not Available609Open in IMG/M
3300009149|Ga0114918_10711460Not Available526Open in IMG/M
3300009193|Ga0115551_1340932Not Available650Open in IMG/M
3300009434|Ga0115562_1219839Not Available672Open in IMG/M
3300009437|Ga0115556_1028959All Organisms → Viruses → Predicted Viral2485Open in IMG/M
3300009437|Ga0115556_1158025Not Available833Open in IMG/M
3300009438|Ga0115559_1175823All Organisms → cellular organisms → Bacteria → Proteobacteria783Open in IMG/M
3300009443|Ga0115557_1353363Not Available546Open in IMG/M
3300009495|Ga0115571_1041017All Organisms → Viruses → Predicted Viral2192Open in IMG/M
3300009496|Ga0115570_10265530Not Available753Open in IMG/M
3300009529|Ga0114919_10460854Not Available880Open in IMG/M
3300009529|Ga0114919_10581600Not Available768Open in IMG/M
3300009529|Ga0114919_11038799Not Available551Open in IMG/M
3300010430|Ga0118733_103568901Not Available843Open in IMG/M
3300011118|Ga0114922_10257106All Organisms → Viruses → Predicted Viral1464Open in IMG/M
3300017727|Ga0181401_1036926All Organisms → Viruses → Predicted Viral1381Open in IMG/M
3300017728|Ga0181419_1004086All Organisms → Viruses → Predicted Viral4617Open in IMG/M
3300017742|Ga0181399_1088794Not Available772Open in IMG/M
3300017757|Ga0181420_1135756Not Available740Open in IMG/M
3300017764|Ga0181385_1121705Not Available797Open in IMG/M
3300017782|Ga0181380_1016109All Organisms → Viruses → Predicted Viral2820Open in IMG/M
3300018416|Ga0181553_10165417Not Available1305Open in IMG/M
3300018420|Ga0181563_10561357Not Available637Open in IMG/M
3300020185|Ga0206131_10013899Not Available7142Open in IMG/M
3300020185|Ga0206131_10032841All Organisms → Viruses → Predicted Viral3857Open in IMG/M
3300020185|Ga0206131_10065936All Organisms → Viruses → Predicted Viral2288Open in IMG/M
3300020187|Ga0206130_10358391Not Available602Open in IMG/M
3300021375|Ga0213869_10293146Not Available696Open in IMG/M
3300022061|Ga0212023_1045981Not Available607Open in IMG/M
3300022206|Ga0224499_10050104Not Available1375Open in IMG/M
3300022217|Ga0224514_10044762All Organisms → Viruses → Predicted Viral1476Open in IMG/M
3300022221|Ga0224506_10101756All Organisms → Viruses → Predicted Viral1385Open in IMG/M
3300022306|Ga0224509_10054837All Organisms → Viruses → Predicted Viral1349Open in IMG/M
3300022307|Ga0224507_10006293All Organisms → Viruses → Predicted Viral4609Open in IMG/M
(restricted) 3300023112|Ga0233411_10000083Not Available32577Open in IMG/M
(restricted) 3300023112|Ga0233411_10069098All Organisms → Viruses → Predicted Viral1112Open in IMG/M
(restricted) 3300023210|Ga0233412_10000303All Organisms → cellular organisms → Bacteria29406Open in IMG/M
(restricted) 3300023210|Ga0233412_10001931Not Available10357Open in IMG/M
(restricted) 3300023210|Ga0233412_10032516All Organisms → Viruses → Predicted Viral2093Open in IMG/M
(restricted) 3300023210|Ga0233412_10047623All Organisms → Viruses → Predicted Viral1740Open in IMG/M
(restricted) 3300023210|Ga0233412_10110906All Organisms → Viruses → Predicted Viral1157Open in IMG/M
(restricted) 3300023276|Ga0233410_10138950Not Available766Open in IMG/M
(restricted) 3300024052|Ga0255050_10007950All Organisms → Viruses → Predicted Viral1816Open in IMG/M
(restricted) 3300024059|Ga0255040_10119978All Organisms → Viruses → Predicted Viral1039Open in IMG/M
(restricted) 3300024059|Ga0255040_10293140Not Available679Open in IMG/M
(restricted) 3300024059|Ga0255040_10304913Not Available666Open in IMG/M
(restricted) 3300024062|Ga0255039_10263027Not Available731Open in IMG/M
3300024262|Ga0210003_1029997All Organisms → Viruses → Predicted Viral3063Open in IMG/M
3300024262|Ga0210003_1051790All Organisms → Viruses → Predicted Viral2089Open in IMG/M
3300024262|Ga0210003_1089203All Organisms → Viruses → Predicted Viral1429Open in IMG/M
3300024262|Ga0210003_1097331All Organisms → Viruses → Predicted Viral1346Open in IMG/M
3300024262|Ga0210003_1102807Not Available1295Open in IMG/M
3300024262|Ga0210003_1118342All Organisms → Viruses → Predicted Viral1177Open in IMG/M
3300024262|Ga0210003_1150252Not Available999Open in IMG/M
3300024262|Ga0210003_1261956Not Available678Open in IMG/M
3300024262|Ga0210003_1301384Not Available614Open in IMG/M
(restricted) 3300024520|Ga0255047_10361222All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.733Open in IMG/M
3300025084|Ga0208298_1060759Not Available724Open in IMG/M
3300025108|Ga0208793_1078008Not Available960Open in IMG/M
3300025168|Ga0209337_1241318Not Available699Open in IMG/M
3300025626|Ga0209716_1164240Not Available563Open in IMG/M
3300025652|Ga0208134_1092905Not Available849Open in IMG/M
3300025666|Ga0209601_1009860All Organisms → Viruses → Predicted Viral4280Open in IMG/M
3300025680|Ga0209306_1000880Not Available15108Open in IMG/M
3300025694|Ga0209406_1012993All Organisms → Viruses → Predicted Viral4046Open in IMG/M
3300025694|Ga0209406_1131596Not Available812Open in IMG/M
3300025806|Ga0208545_1092206Not Available806Open in IMG/M
3300025869|Ga0209308_10197361All Organisms → cellular organisms → Bacteria → Proteobacteria894Open in IMG/M
3300025886|Ga0209632_10101034All Organisms → Viruses → Predicted Viral1683Open in IMG/M
3300025897|Ga0209425_10577377Not Available501Open in IMG/M
(restricted) 3300027856|Ga0255054_10648909Not Available510Open in IMG/M
(restricted) 3300027861|Ga0233415_10000542Not Available17623Open in IMG/M
(restricted) 3300027861|Ga0233415_10033835All Organisms → Viruses → Predicted Viral2082Open in IMG/M
(restricted) 3300027861|Ga0233415_10250330All Organisms → cellular organisms → Bacteria827Open in IMG/M
(restricted) 3300027881|Ga0255055_10698194Not Available541Open in IMG/M
(restricted) 3300027996|Ga0233413_10177941Not Available888Open in IMG/M
(restricted) 3300027996|Ga0233413_10470293Not Available554Open in IMG/M
(restricted) 3300028045|Ga0233414_10157330All Organisms → Viruses → Predicted Viral1006Open in IMG/M
3300031539|Ga0307380_10109338All Organisms → Viruses → Predicted Viral2830Open in IMG/M
3300031565|Ga0307379_11260687Not Available608Open in IMG/M
3300031669|Ga0307375_10060466Not Available2858Open in IMG/M
3300032073|Ga0315315_10002152Not Available18034Open in IMG/M
3300033742|Ga0314858_013050Not Available1717Open in IMG/M
3300033742|Ga0314858_069003Not Available877Open in IMG/M
3300033742|Ga0314858_069824All Organisms → cellular organisms → Bacteria → Proteobacteria872Open in IMG/M
3300033742|Ga0314858_084538Not Available798Open in IMG/M
3300033742|Ga0314858_137892Not Available625Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface15.52%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater15.52%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine14.66%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.62%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine6.03%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous6.03%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine4.31%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine4.31%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment4.31%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater3.45%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.45%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil2.59%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.72%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.72%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.72%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.86%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.86%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.86%
Marine SedimentEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment0.86%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.86%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.86%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment0.86%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300001355Pelagic Microbial community sample from North Sea - COGITO 998_met_08EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300003142Marine sediment microbial communities from deep subseafloor - Sample from 5.1 mbsfEnvironmentalOpen in IMG/M
3300004278Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150mEnvironmentalOpen in IMG/M
3300005939Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKXEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009050Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009136Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsfEnvironmentalOpen in IMG/M
3300009142Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022206Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24EnvironmentalOpen in IMG/M
3300022217Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24EnvironmentalOpen in IMG/M
3300022221Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1EnvironmentalOpen in IMG/M
3300022306Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24EnvironmentalOpen in IMG/M
3300022307Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_13EnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300024052 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5EnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025666Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)EnvironmentalOpen in IMG/M
3300025680Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)EnvironmentalOpen in IMG/M
3300025694Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025869Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300027856 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027881 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1006690953300000101MarineMETILRNELETADKRIIVLESTIETYKRIVSALEQRLELMEQNYKTDIKLNYTKNK*
DelMOSum2011_1009608613300000115MarineMETILRNELETADKRIIVLESTIETYKRIVSALEQRLELMEQNYKTDIKLNYTK
DelMOSpr2010_1026618423300000116MarineMETILRNELETADKRIIVLESTIETYKRIVASLDERIELMEKSHKFEIENYYTKNK*
DelMOWin2010_1006649453300000117MarineMETILRNELETAEKRIIVLESTIETYKRIVASLDERLELMEKSHKFELENYYTKNK*
DelMOWin2010_1011583123300000117MarineMETILRNELETAEKRIIVLESTIETYKKIVAGLDERLELMEKSHKFELENYYTKNK*
JGI20155J14468_1020047923300001354Pelagic MarineMETIXRNELETADKRIIVLESTIETYKKIVAGMDERIELMEKSHAFELENYYT
JGI20158J14315_1011917513300001355Pelagic MarineMETILRNELETADKRIIVLESTIETYKRIVAALDERIELMEK
JGI24006J15134_10013498113300001450MarineMEDILRSEILTAEKRIIVLESTIETYKNIVDAMEQRIELMEENHKTDIKLNYTKNTEL*
JGI24006J15134_1019958213300001450MarineMERILRTELEIADKRIIVLESTIETYKRIVASLDERLELMEKSHKFELEN
Ga0052242_101844733300003142Marine SedimentMEAILRSELHTADKRIIVLESTIEYYKQIVDAMEQRIELMEQ
Ga0066609_1015387223300004278MarineMETILRSELETADKRIIVLESTIDTYKRILDAQDERIELMEKSHKFELENYYTKNTEL*
Ga0075123_1032185623300005939Saline LakeMEAILRTELETADKRIIVLESTIEAYKGLVSAQEKRIEMLEKSHAFELENYYTKNK*
Ga0098058_105143923300006750MarineMKTILRTELKTADERIILLESTIETYKRIIAAMDERIELMEKSHAFELENFYTKNTEL*
Ga0098055_107658943300006793MarineMETILRNELKEADNRIIILESTIEAYKGLVKAQEERIELLEKSHAFELENYYIKK*
Ga0070748_1001424183300006920AqueousMETILRNELKEADKRIIILESTIEAYKGLVKAQETRIELLEKSHAFELENYYIKK*
Ga0070748_105652643300006920AqueousMETILRNELETAEKRIIVLESTIETYKKIVAGMDERIELMEKSHKFELENYYTKNK*
Ga0070748_110231313300006920AqueousMETILRNELETADKRIIVLESTIEAYKELVKAQETRIELLEKSHAFELENYYIKK*
Ga0075444_1030136723300006947MarineMETILRTELETADKRIIVLESTIEAYKGLVSAQEKRIEMLEKSHAFELDNYYTKNK*
Ga0099847_105168333300007540AqueousMETILRSELHTADKRIVVLESTIESYKQIVAAMDERIELMEKSHAFELENFYTKNK*
Ga0115371_10102926183300008470SedimentMEAILRTELETADKRIIVLESTIDTYKRILDAMDERIELMEKSHKFELENFYTKNK*
Ga0102909_118150623300009050EstuarineMETILRSELETADKRIVVLQSTIESYKRILKAQDERIEMMEISHAFELENYYTKNTEL*
Ga0115566_1002834633300009071Pelagic MarineMETILRTELETADKRIIVLESTIETYKRIVAALDERIELMEKSHKFELENYYTKNK*
Ga0115566_1019899233300009071Pelagic MarineMETILRTELETAEKRIIVLESTIETYKRIVAGMDERIELMEKSHAFELENYYTKNK*
Ga0115552_108639223300009077Pelagic MarineMEKILRNELETADKRIIVLESTIDTYKRIIAALDERIELMERNHKFELENFYTKNSEL*
Ga0118735_1016328533300009136Marine SedimentMKDNYLKNELETADKRIIVLESTIDTYKRIIAALDERIELMERNHKFELENFYTKNSEL*
Ga0102885_117816723300009142EstuarineMETILRTELETADKRIIVLQSTIDTYKRILDAQDERIELMEKSHKFELENYYTKNTEL*
Ga0114918_1018383523300009149Deep SubsurfaceMETILRNELETADKRIIVLESTIETYKKIVAGMDERIELMEKSHAFELENYYTKNTEL*
Ga0114918_1018880343300009149Deep SubsurfaceEDILRTELETADKSIIILERTIDTYKKIVGAMEQRIELMEENHKTDIKLNYTKNTEL*
Ga0114918_1038627633300009149Deep SubsurfaceMEDILRTELETADKRIIVLESTIKYYKQIVDAMEQRIELMEEN
Ga0114918_1055659523300009149Deep SubsurfaceMETILRTELETADKRIIVLESTIDTYKRILDAMDERIELMEKSHKFELENFYTKNK*
Ga0114918_1071146013300009149Deep SubsurfaceMETILRTELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMN
Ga0115551_134093223300009193Pelagic MarineMETILRNELETADKRIIVLESTIDTYKRIIAALDERIELM
Ga0115562_121983923300009434Pelagic MarineMETILRNELETADKRIIVLESTIETYKRIVAALDERIELMEKSHAFELEN
Ga0115556_102895963300009437Pelagic MarineMETILRNELETADKRIIVLESTIETYKRIVAALDERIELMEKSHAFELENYYTKNK*
Ga0115556_115802523300009437Pelagic MarineMETILRTELETADKRIIVLESTIETYKRIVDAMEQRLELMEENHKTDIKLNYTKNK*
Ga0115559_117582323300009438Pelagic MarineMETILRSELHTADKRIIVLESTIESYKKIVEALEQRIELLEENHKLDIKLNYTKNK*
Ga0115557_135336323300009443Pelagic MarineMETILRTELETADKRIIVLESTIETYKRIVASLDERLELMEKSHAFELENYYTKNK*
Ga0115571_104101763300009495Pelagic MarineMETILRNELKTADKRIIALESRIEAYKELVKAQETRIELLERSHAFELENYYIKK*
Ga0115570_1026553023300009496Pelagic MarineMETILRNELETADKRIIALESRIEAYKKLVKAQETRIELLERSHAFELENYYIKK*
Ga0114919_1046085423300009529Deep SubsurfaceMETILRNELETADKRIIVLESTIETYKKIVAGLDERLELMEKSHKFELENYYTKNK*
Ga0114919_1058160033300009529Deep SubsurfaceMETILRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENH
Ga0114919_1103879923300009529Deep SubsurfaceMETILRSELETADKRIIVLESTIETYKRIVDAMEQRLELMEQNYKTDIKLNYTKNK*
Ga0118733_10356890123300010430Marine SedimentMETILRNELKEADKRIIILESTIEAYKGLVKAQETRIELLEKSHAFELANYYIKK*
Ga0114922_1025710623300011118Deep SubsurfaceMETILRNELETADKRIIVLESTIETYKRIVAGLNERLELMELSHAFELENYYTKNTEL*
Ga0181401_103692633300017727SeawaterMETILRNELKEADKRIIILESTIEAYKGLVKAQEERIELLEKSHAFELENYYVKK
Ga0181419_100408673300017728SeawaterMETILRNELETADKRIIVLESTIEAYKGLVKAQETRIELLEKSHAFELENYYIKK
Ga0181399_108879423300017742SeawaterMETILRNELKEADKRIIILESTIEAYKGLVKAQEERIELLEKSHAFELENYYIKK
Ga0181420_113575623300017757SeawaterMETILRNELETADKRIIVLESTIEAYKGLVKAQENRIELLEKSHAFELENYYIKK
Ga0181385_112170513300017764SeawaterNELETADKRIIVLESTIETYKRIVASLDERLELMEKSHKFELENYYTKNK
Ga0181380_101610973300017782SeawaterMETILRNELKTADKRIIVLESTIEAYKGLVKAQEERIELLERSHAFELENYYVKK
Ga0181553_1016541733300018416Salt MarshMETILRNELETAEKRIIVLESTIETYKKIVAGMDERIELMEKSHKFELENYYTKNK
Ga0181563_1056135723300018420Salt MarshMETILRNELETAEKRIIVLESTIETYKKIVAGMDERLELMEKSHAFELENYYTKNTEL
Ga0206131_10013899113300020185SeawaterMETILRTELETADKRIIVLESTIETYKRIVSALDERIELMEKSHKFELENYYTKNK
Ga0206131_1003284163300020185SeawaterMETILRNELETADKRIIVLESTIETYKRIVAALDERIELMKKNHKFELENYYTKNAKL
Ga0206131_1006593623300020185SeawaterMETILRNELETADKRIIVLESTIETYKKIVAGMDERIELMEKSHAFELENYYTKNTEL
Ga0206130_1035839113300020187SeawaterNELETADKRIIVLESTIETYKKIVAGMDERIELMEKSHAFELENYYTKNTEL
Ga0213869_1029314623300021375SeawaterMETILRNELETADKRIIVLESTIETYKRIVSALEQRLELMEQNYKTDIKLNYTKNK
Ga0212023_104598123300022061AqueousMETILRNELKEADKRIIILESTIEAYKGLVKAQETRIELLEKSHAFELENYYIKK
Ga0224499_1005010423300022206SedimentMESILRTELETADKRIIVLESTIETYKKIVAGMDERIELMEKSHKFELENYYTKNTEL
Ga0224514_1004476233300022217SedimentMESILRTELETADKRIIVLESTIETYKRIVASLDERLELMEKSHAFELENYYTKNTEL
Ga0224506_1010175613300022221SedimentMETILRTELETADKRIIVLESTIETYKRIVASLDERLELMEKSHAFELENYYTKNTEL
Ga0224509_1005483753300022306SedimentMETILRTELETADKRIIVLESTIETYKRIVAGMDERIELMEKSHRF
Ga0224507_1000629323300022307SedimentMETILRTELETADKRIIVLESTIETYKRIVAGLDERIELMEKSHKFELENYYTKNKTNES
(restricted) Ga0233411_10000083483300023112SeawaterMETILRSELETADKRIIVLESTIDTYKRILDAQDERIELMEKSHKFELENYYTKNTEL
(restricted) Ga0233411_1006909823300023112SeawaterMETILRTELKTADERIILLESTIETCKRIIAAMDERIELMEKSHAFELENFYTKNSEL
(restricted) Ga0233412_10000303113300023210SeawaterMETILRNELETADKRIIVLESTIEAYKGLVSAQEKRIEMLEKSHAFELENYYTKNTEL
(restricted) Ga0233412_10001931243300023210SeawaterMETILRTELKTADKRIIVLESTIETYKRIIAALDERIELMERNHKFELENFYTKNSEL
(restricted) Ga0233412_1003251623300023210SeawaterMETILRNELETADKRIIVLESTIETYKNIVDAMEQRLELMEENHKFELENYYTKNTEL
(restricted) Ga0233412_1004762323300023210SeawaterMEDILRSELETADKRIIVLESTIETYKKIVAGMDERIELMEKSHKFELDNFYTKNK
(restricted) Ga0233412_1011090623300023210SeawaterMETILRTELETADKRIIVLESTIDTYKRILDAQDERIELMEKSHKFELENYYTKNTEL
(restricted) Ga0233410_1013895033300023276SeawaterMETILRNELETADKRIIVLESTIETYKNIVDAMEQRLELMERNHKF
(restricted) Ga0255050_1000795053300024052SeawaterMETILRTELDTADKRIIVLESTIETYKRIIAALDERIELMERNHKFELENFYTKNSEL
(restricted) Ga0255040_1011997823300024059SeawaterMESILRTELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKTDIKLNYTKNK
(restricted) Ga0255040_1029314023300024059SeawaterMETILRTELDTADKRIIVLESTIETYKRIIAALDERIELMEKSHKFELENYYTKNTEL
(restricted) Ga0255040_1030491323300024059SeawaterMESILRTELETADKRIIVLESTIETYKRIVAGLDERLELMEKSHAFELENYYTKNK
(restricted) Ga0255039_1026302713300024062SeawaterMETILRTELETADKRIIVLESTIETYKRIVAGLDERIELMEKSHKFELENYY
Ga0210003_102999743300024262Deep SubsurfaceMETILRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLNYTKNK
Ga0210003_105179023300024262Deep SubsurfaceMEDILRTELETADKSIIILERTIDTYKKIVGAMEQRIELMEENHKTDIKLNYTKNTEL
Ga0210003_108920343300024262Deep SubsurfaceMETILRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLHYTKNK
Ga0210003_109733143300024262Deep SubsurfaceMEDILRTELETADKRIIVLESTIKYYKQIVDAMEQRIELMEENHKMNIKLHYTKNTEL
Ga0210003_110280743300024262Deep SubsurfaceMETILRTELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLNYTKNK
Ga0210003_111834243300024262Deep SubsurfaceRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLNYTKNK
Ga0210003_115025213300024262Deep SubsurfaceMETILRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLHYTKNTEL
Ga0210003_126195613300024262Deep SubsurfaceMETILRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLNYTKNKQS
Ga0210003_130138423300024262Deep SubsurfaceMETILRTELETADKRIIVLESTIKYYKQIVDAMEQRIELMEENHKMNIKLNYTKNK
(restricted) Ga0255047_1036122223300024520SeawaterMETILRTELETADKRIIVLESTIETYKRIVAGLDERIELMEKSHKFELENYYTKNTEL
Ga0208298_106075923300025084MarineMETILRNELKEADNRIIILESTIEAYKGLVKAQEERIELLEKSHAF
Ga0208793_107800823300025108MarineMETILRNELKEADNRIIILESTIEAYKGLVKAQEERIELLEKSHAFELENYYIKK
Ga0209337_124131823300025168MarineMETILRNELHTADKRIIVLESTIETYKRIVAGLDERLELMEKSHKFELEN
Ga0209716_116424013300025626Pelagic MarineILRNELETADKRIIALESRIEAYKKLVKAQETRIELLERSHAFELENYYIKK
Ga0208134_109290513300025652AqueousMETILRNELETADKRIIVLESTIETYKRIVSALEQQLELMEQNYKTDIKLNYTKNK
Ga0209601_1009860103300025666Pelagic MarineMETILRNELETADKRIIVLESTIETYKRIVAALDERIELMEKSHAFELENYYTKNK
Ga0209306_1000880203300025680Pelagic MarineMEKILRNELETADKRIIVLESTIDTYKRIIAALDERIELMERNHKFELENFYTKNSEL
Ga0209406_101299343300025694Pelagic MarineMETILRNELETADKRIIALESRIEAYKKLVKAQETRIELLERSHAFELENYYIKK
Ga0209406_113159613300025694Pelagic MarineMETILRNELETADKRIIALESRIEAYKELVKAQETRIELLERSHAFELENYYIKK
Ga0208545_109220613300025806AqueousMETILRNELETADKRIIVLESTIETYKRIVSALEQRL
Ga0209308_1019736123300025869Pelagic MarineMETILRTELETADKRIIVLESTIETYKRIVAALDERIELMEKSHKFELENYYTKNK
Ga0209632_1010103423300025886Pelagic MarineMETILKTELETADKRIIVLESTIETYKRIVASLDERLELMEKSHKFELENYYTKKIKL
Ga0209425_1057737713300025897Pelagic MarineMETILRNELETADKRIIVLESTIETYKRIVAALDERIELMEKSHK
(restricted) Ga0255054_1064890913300027856SeawaterMETILRTELDTADKRIIVLESTIETYKRIIAALDERIELKERNHKFELENFYTKNSEL
(restricted) Ga0233415_10000542153300027861SeawaterMETILRTELETADKRIVVLESTIDTYKRILDAQDERIELMEKSHKFELENYYTKNTEL
(restricted) Ga0233415_1003383523300027861SeawaterMETILRNELETADKRIIVLESTIEAYKGLVTAQEKRIEMLEKSHAFELENYYTKNTEL
(restricted) Ga0233415_1025033023300027861SeawaterMETILRNELETADKRIIVLESTIETYKNIVDAMEQRLELMEENHKFALENYYTKNTEL
(restricted) Ga0255055_1069819413300027881SeawaterMETILRTELETADKRIIVLESTIETYKNIVDAMEQRLELMEENHKFELENYYTKNTEL
(restricted) Ga0233413_1017794123300027996SeawaterLNNMETILRNELETADKRIIVLESTIEAYKGLVTAQEKRIEMLEKSHAFELENYYTKNTE
(restricted) Ga0233413_1047029323300027996SeawaterMEDILRSELETADKRIIVLESTIETYKKIVAGMDERIELMEKSHKFELDNFYTKN
(restricted) Ga0233414_1015733043300028045SeawaterMETILRTELETADKRIVVLESTIESYKQIVAAMDERIEL
Ga0307380_1010933843300031539SoilMETILRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKRDIKLNYTKNK
Ga0307379_1126068733300031565SoilETILRTELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLNYTKNKQS
Ga0307375_1006046663300031669SoilMETILRSELETADKRIIVLESTIEYYKQIVDAMEQRIELMEENHKMNIKLNYTKKQII
Ga0315315_10002152243300032073SeawaterMETILRTELETADKRIIVLESTIETYKRIVASLDERLELMEKSHAFELENYYTKNK
Ga0314858_013050_374_5443300033742Sea-Ice BrineMETILRTELHTADKRIVVLQSTIESYKRIVAALDERIELMEKSHKFELDNFYTKNK
Ga0314858_069003_71_2473300033742Sea-Ice BrineMETILRNELETADKRIIVLQSTIESYKRIVAALDERIELMEKSHKFELENYYTKNTEL
Ga0314858_069824_316_4863300033742Sea-Ice BrineMETILRSELETADKRIIVLESTIESYKNILDAMEQRLELMEQNHKFELENYYTKNK
Ga0314858_084538_2_1693300033742Sea-Ice BrineMEDILRSELEVADKRIIDLERILFTYKRIVAAMDERTELLEQNHKFEIENYYTKNT
Ga0314858_137892_166_3423300033742Sea-Ice BrineMEDILRSELEVADKSIIILERTISTYKKIVDAMEQRIELMEENHKTDIKLNYTKNTEL


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