Scaffold Ga0318575_10036296

Overview

Basic Information

• Taxon OID: 3300032055
• Scaffold ID: Ga0318575_10036296
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2195
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033021	Metagenome / Metatranscriptome	178	Y
F095956	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318575_100362964	F033021	GGAGG	MSSAVATAFVFVVLVVGGLIGYAMYQWGRQHAISYKTRAELTTSEEYRRLSEMAVTAQEHTDLKLAEINMQLAQLRDQLDQVQKVLRDVE
Ga0318575_100362965	F095956	GAG	MDHDCDEDRLTTAEQLAGHSPSAAAQALSAIACDGEVGGEVRLSAAERLA