NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318532_10382021

Scaffold Ga0318532_10382021


Overview

Basic Information
Taxon OID3300032051 Open in IMG/M
Scaffold IDGa0318532_10382021 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041340Metagenome / Metatranscriptome160Y
F076053Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0318532_103820211F076053N/ASLGRRAVRSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318532_103820212F041340AGGAGMEPGSDNRIHPNPSSPPETDADVAPLIQKVGAPSIAQIEKLIGELHEARN
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