Metagenome / Metatranscriptome Family F076053

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076053
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	88 residues
Representative Sequence	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAIRRLR
Number of Associated Samples	83
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	53.85 %
% of genes near scaffold ends (potentially truncated)	54.24 %
% of genes from short scaffolds (< 2000 bps)	86.44 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.712 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.848 % of family members)
Environment Ontology (ENVO)	Unclassified (72.034 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.847 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.55% β-sheet: 4.26% Coil/Unstructured: 53.19%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF11953	DUF3470	3.39
PF01068	DNA_ligase_A_M	2.54
PF11306	DUF3108	2.54
PF01381	HTH_3	1.69
PF03401	TctC	0.85
PF04392	ABC_sub_bind	0.85
PF07045	DUF1330	0.85
PF00872	Transposase_mut	0.85
PF01022	HTH_5	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.54
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.54
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.85
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.85
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.85
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
All Organisms	root	All Organisms	37.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
cellular organisms	root	All Organisms → cellular organisms	37.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.05 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.54 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	16.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.54 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.54 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.85 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.54 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.85 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.85 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.54 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.85 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.85 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.54 %
Afipia sp. GAS231	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. GAS231	0.85 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.85 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100281424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300001545\|JGI12630J15595_10053799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300002245\|JGIcombinedJ26739_101781695	Not Available	516	Open in IMG/M
3300005165\|Ga0066869_10003478	Not Available	1863	Open in IMG/M
3300005332\|Ga0066388_107704843	Not Available	539	Open in IMG/M
3300005468\|Ga0070707_100894107	Not Available	853	Open in IMG/M
3300005713\|Ga0066905_100048997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2570	Open in IMG/M
3300005764\|Ga0066903_104596211	Not Available	735	Open in IMG/M
3300005764\|Ga0066903_104998914	Not Available	703	Open in IMG/M
3300005764\|Ga0066903_105218550	Not Available	687	Open in IMG/M
3300005764\|Ga0066903_105739568	Not Available	652	Open in IMG/M
3300005764\|Ga0066903_105785733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300006578\|Ga0074059_12111213	Not Available	1272	Open in IMG/M
3300010043\|Ga0126380_10081203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1878	Open in IMG/M
3300010043\|Ga0126380_11512438	Not Available	595	Open in IMG/M
3300010046\|Ga0126384_10910767	Not Available	795	Open in IMG/M
3300010046\|Ga0126384_11712856	Not Available	595	Open in IMG/M
3300010046\|Ga0126384_12281541	Not Available	522	Open in IMG/M
3300010048\|Ga0126373_10339437	All Organisms → cellular organisms → Bacteria → Proteobacteria	1511	Open in IMG/M
3300010358\|Ga0126370_10242572	Not Available	1392	Open in IMG/M
3300010358\|Ga0126370_10243844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1389	Open in IMG/M
3300010360\|Ga0126372_10738014	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300010399\|Ga0134127_11425905	Not Available	764	Open in IMG/M
3300010868\|Ga0124844_1182874	Not Available	776	Open in IMG/M
3300011269\|Ga0137392_10378826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174	Open in IMG/M
3300012971\|Ga0126369_12452743	Not Available	607	Open in IMG/M
3300016294\|Ga0182041_10498623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1055	Open in IMG/M
3300016294\|Ga0182041_10778459	Not Available	853	Open in IMG/M
3300016294\|Ga0182041_11470179	Not Available	627	Open in IMG/M
3300016294\|Ga0182041_11497167	Not Available	621	Open in IMG/M
3300016294\|Ga0182041_11808885	Not Available	566	Open in IMG/M
3300016319\|Ga0182033_10831881	Not Available	815	Open in IMG/M
3300016357\|Ga0182032_10611559	Not Available	907	Open in IMG/M
3300016371\|Ga0182034_11022492	Not Available	714	Open in IMG/M
3300016387\|Ga0182040_10392895	Not Available	1086	Open in IMG/M
3300016422\|Ga0182039_10578691	Not Available	979	Open in IMG/M
3300016422\|Ga0182039_10669967	Not Available	912	Open in IMG/M
3300016422\|Ga0182039_10907538	Not Available	787	Open in IMG/M
3300016422\|Ga0182039_11036272	Not Available	737	Open in IMG/M
3300016422\|Ga0182039_12031401	Not Available	529	Open in IMG/M
3300021560\|Ga0126371_11947017	Not Available	706	Open in IMG/M
3300021560\|Ga0126371_12446744	Not Available	632	Open in IMG/M
3300021560\|Ga0126371_13379083	Not Available	539	Open in IMG/M
3300025905\|Ga0207685_10574917	Not Available	602	Open in IMG/M
3300025922\|Ga0207646_10837498	Not Available	818	Open in IMG/M
3300026551\|Ga0209648_10317665	Not Available	1100	Open in IMG/M
3300027903\|Ga0209488_10108120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2087	Open in IMG/M
3300031543\|Ga0318516_10230930	Not Available	1070	Open in IMG/M
3300031543\|Ga0318516_10379618	Not Available	815	Open in IMG/M
3300031545\|Ga0318541_10052398	Not Available	2099	Open in IMG/M
3300031545\|Ga0318541_10389728	Not Available	778	Open in IMG/M
3300031546\|Ga0318538_10086025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1603	Open in IMG/M
3300031546\|Ga0318538_10089541	Not Available	1574	Open in IMG/M
3300031546\|Ga0318538_10355338	Not Available	791	Open in IMG/M
3300031546\|Ga0318538_10634589	Not Available	579	Open in IMG/M
3300031549\|Ga0318571_10132037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300031561\|Ga0318528_10083008	Not Available	1664	Open in IMG/M
3300031564\|Ga0318573_10018103	Not Available	3129	Open in IMG/M
3300031572\|Ga0318515_10110300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1449	Open in IMG/M
3300031573\|Ga0310915_10026590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3569	Open in IMG/M
3300031573\|Ga0310915_10566712	Not Available	805	Open in IMG/M
3300031640\|Ga0318555_10542290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300031668\|Ga0318542_10072397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1616	Open in IMG/M
3300031668\|Ga0318542_10103619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1376	Open in IMG/M
3300031679\|Ga0318561_10046313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2161	Open in IMG/M
3300031679\|Ga0318561_10056345	All Organisms → cellular organisms → Bacteria → Proteobacteria	1982	Open in IMG/M
3300031680\|Ga0318574_10606943	Not Available	641	Open in IMG/M
3300031682\|Ga0318560_10235178	Not Available	982	Open in IMG/M
3300031713\|Ga0318496_10300002	Not Available	887	Open in IMG/M
3300031713\|Ga0318496_10357791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	806	Open in IMG/M
3300031719\|Ga0306917_10268820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1310	Open in IMG/M
3300031744\|Ga0306918_10502374	Not Available	949	Open in IMG/M
3300031744\|Ga0306918_10587978	Not Available	872	Open in IMG/M
3300031747\|Ga0318502_10939371	Not Available	526	Open in IMG/M
3300031748\|Ga0318492_10537445	Not Available	621	Open in IMG/M
3300031764\|Ga0318535_10097407	Not Available	1285	Open in IMG/M
3300031769\|Ga0318526_10476230	Not Available	510	Open in IMG/M
3300031770\|Ga0318521_10474591	Not Available	750	Open in IMG/M
3300031771\|Ga0318546_10104771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1860	Open in IMG/M
3300031781\|Ga0318547_10651798	Not Available	654	Open in IMG/M
3300031792\|Ga0318529_10034386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2118	Open in IMG/M
3300031792\|Ga0318529_10171679	Not Available	1002	Open in IMG/M
3300031793\|Ga0318548_10527770	Not Available	576	Open in IMG/M
3300031793\|Ga0318548_10533886	Not Available	572	Open in IMG/M
3300031795\|Ga0318557_10543097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300031798\|Ga0318523_10129990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1247	Open in IMG/M
3300031832\|Ga0318499_10152151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300031833\|Ga0310917_10188817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1374	Open in IMG/M
3300031835\|Ga0318517_10252866	Not Available	795	Open in IMG/M
3300031880\|Ga0318544_10184959	Not Available	803	Open in IMG/M
3300031890\|Ga0306925_10172973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2326	Open in IMG/M
3300031890\|Ga0306925_10406531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1458	Open in IMG/M
3300031896\|Ga0318551_10053665	Not Available	2041	Open in IMG/M
3300031896\|Ga0318551_10241187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1008	Open in IMG/M
3300031897\|Ga0318520_10028909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2746	Open in IMG/M
3300031910\|Ga0306923_12411656	Not Available	521	Open in IMG/M
3300031912\|Ga0306921_10093150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3482	Open in IMG/M
3300031941\|Ga0310912_11255885	Not Available	562	Open in IMG/M
3300031945\|Ga0310913_10597633	Not Available	782	Open in IMG/M
3300031946\|Ga0310910_10575042	Not Available	893	Open in IMG/M
3300031947\|Ga0310909_10219228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. GAS231	1584	Open in IMG/M
3300031947\|Ga0310909_10598188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300031954\|Ga0306926_10611185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1330	Open in IMG/M
3300031981\|Ga0318531_10016042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2916	Open in IMG/M
3300032001\|Ga0306922_10131353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2668	Open in IMG/M
3300032001\|Ga0306922_10308499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1699	Open in IMG/M
3300032010\|Ga0318569_10159637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1040	Open in IMG/M
3300032025\|Ga0318507_10043663	Not Available	1735	Open in IMG/M
3300032039\|Ga0318559_10355687	Not Available	682	Open in IMG/M
3300032044\|Ga0318558_10488795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300032051\|Ga0318532_10382021	Not Available	500	Open in IMG/M
3300032052\|Ga0318506_10144513	Not Available	1039	Open in IMG/M
3300032054\|Ga0318570_10026602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2258	Open in IMG/M
3300032060\|Ga0318505_10082786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1432	Open in IMG/M
3300032063\|Ga0318504_10132244	Not Available	1139	Open in IMG/M
3300032261\|Ga0306920_100494102	Not Available	1816	Open in IMG/M
3300033290\|Ga0318519_10025416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2719	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.98%
Loam	Environmental → Terrestrial → Soil → Loam	11.02%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	72.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	50.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1002814241	3300000364	Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGARGDLLFVAIFGAPCAVTIIEAVRRLH*
JGI12630J15595_100537993	3300001545	Forest Soil	LNNNNRASNGIQVDKGVAPGTLFLFSLGLVGARSSGNYTERCHIKCEMKAPRIDPAVPELAALSALAAVGCGLAAAQGDLWFVTVFGAASVVTMIEVVRRLL*
JGIcombinedJ26739_1017816951	3300002245	Forest Soil	NNNRASNGIQVDKGVAPGTLFLFSLGLVGARSSGNYTERCHIKCEMKAPRIDPAVPELAALSALAAVGCGLAAAQGDLWFVTVFGAASVVTMIEVVRRLL*
Ga0066869_100034782	3300005165	Soil	DKGVAPGPLFLFPLGLVGARSSGNYTERCHIKCEMKAPRIDPAVPELAALSALAAVGCGLAAAQGDLWFVTVFGAASVVTMIEVVRRLL*
Ga0066388_1077048431	3300005332	Tropical Forest Soil	ARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWLNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR*
Ga0070707_1008941072	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL*
Ga0066905_1000489972	3300005713	Tropical Forest Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAARQGDFLFVVLFGAASVVTIIEAILRLR*
Ga0066903_1045962111	3300005764	Tropical Forest Soil	PSPLFLFALGRLDARSLGNHAERCHIKCVMKALWMDPGVRELAALSALAALGCGLAVAQGDLLFVALFGAASVVAIIEAIRRLR*
Ga0066903_1049989141	3300005764	Tropical Forest Soil	MGPARQPDRFPGSVFPVSLDFLVACSLGHYTETRHIKCRMKAPWMDPALRELAALSALAALGCGLAAGQGDFLFVVLFGAASVVTIIEAILRLR*
Ga0066903_1052185501	3300005764	Tropical Forest Soil	MGPACQPDRFSGSVFPFSLDFLVACSLGHYTETRHIKCRMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVL
Ga0066903_1057395681	3300005764	Tropical Forest Soil	MGYERKPDRFPSPLFALGRLDARSLGNHAERCHIKRVMKALWMDLGVPELAALSALAALGCGLATAQGDLLFVALFAATSVVAIIEAIRRLR*
Ga0066903_1057857331	3300005764	Tropical Forest Soil	MGYERKPDRFPSPLFLFALGRLDARSLGNHAERRHIKCVMKALWMDPGVRELAALSALAALGCGLATAQGDLLFVALFAATSVVAIIERRLR*
Ga0074059_121112131	3300006578	Soil	MNNNNRASKQQQSVQWHSSGLVAPGPLFLFSLGLVGARSSGNYTERCHIKCEMKAPRIDPAVPELAALSALAAVGCGLAAAQGDLWFVTVFGAASVVTMIEVVRRLL*
Ga0126380_100812032	3300010043	Tropical Forest Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYSESRHIKCEMKALWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR*
Ga0126380_115124381	3300010043	Tropical Forest Soil	PLFLFSLGRLDARSLGNYAERCHIKREMKALWMDPRVRELAALSALAALGCGLAAGQGDLLFVAIFGAACAVTIIEAIRRLR*
Ga0126384_109107672	3300010046	Tropical Forest Soil	GPLFLISLGLVGARSLGNYTERRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVALFAATSVVAIIEAIRRLR*
Ga0126384_117128562	3300010046	Tropical Forest Soil	FALGCLDARSSGNYAERCHIKCEMKALWMDSGVREMAALSALAALGCGLAAVQGDLLFVVIFGAACAVTIIEAIRRLQ*
Ga0126384_122815411	3300010046	Tropical Forest Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAIRRLR*
Ga0126373_103394371	3300010048	Tropical Forest Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIKCEMKALWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR*
Ga0126370_102425724	3300010358	Tropical Forest Soil	MIAGDLAAYLLGLQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTII
Ga0126370_102438441	3300010358	Tropical Forest Soil	KPDRFPSPLFLFALGRLDARSLGNYAERCHIKRELKALWMDPRVRELAALSALAALGCGLAAGQGDLLFVAIFGAACAVTIIEAIRRLR*
Ga0126372_107380142	3300010360	Tropical Forest Soil	MGYERKPDRFPSPLFLFSLGRLDARSLGNYAERCHIKRELKALWMDPRVRELAALSALAALGCGLAAGQGDLLFLAIFGAASVVTIIEVVRRLL*
Ga0134127_114259051	3300010399	Terrestrial Soil	VREPRRVRALTDSNGIQVDKGVAPGPLFLFSLGLVGARSSGNYTERCHIKCEMKAPRIDPAVPELAAISGLAVLGCGLAAAQGDFWFATVFGAASVVTMIEVVRRLL*
Ga0124844_11828741	3300010868	Tropical Forest Soil	MGQASEPARFPGPLFLVSLGLVGTRSLGNYTESRHIKCEMKAPWMNPGVRELAALGCGLAAGQGDLLFVALFGAASIVTIIEAIRHLR*
Ga0137392_103788261	3300011269	Vadose Zone Soil	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEVVRRLL*
Ga0126369_124527431	3300012971	Tropical Forest Soil	MGPARQPDRLPGSVFPFSLGFLDARSLGHYTETRHIKCRMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVLFGAASIVAIIEAILRLR*
Ga0182041_104986231	3300016294	Soil	GPLFLVSLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAIRRLR
Ga0182041_107784591	3300016294	Soil	MGPACQPDRFPGSVFPFSLDFLVACSLGHYTETRHIKCRMKAPWTDPGLRELAALSALAALGCGLAAGQGDFLFVVLFGAASAVAIIEAILRLR
Ga0182041_114701792	3300016294	Soil	GYARKPDRFPSPLFLFSLGRRAVRSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0182041_114971671	3300016294	Soil	PGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEVIRRLR
Ga0182041_118088851	3300016294	Soil	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTGRCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAGQGDFLFVAIF
Ga0182033_108318812	3300016319	Soil	EPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0182032_106115592	3300016357	Soil	SLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAVRRLR
Ga0182034_110224921	3300016371	Soil	MGPARQPDRFPGSVFPFSLDFLVACSLGHYTETRHIKCRMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVV
Ga0182040_103928951	3300016387	Soil	MGQASEPARFPGPLFLVSLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIMEAVRRLR
Ga0182039_105786911	3300016422	Soil	MGYARKPDRFPSPLFLFSLGRRAVRSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFG
Ga0182039_106699672	3300016422	Soil	SLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAFFGAASIVTIIEAVRRLR
Ga0182039_109075382	3300016422	Soil	LVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0182039_110362722	3300016422	Soil	FSLGRLDARSLGNYAERCHIKRELKALWMDPRVRELAALSALAALGCGLAAGQGDLLFLAIFGAASVVTIIEVVRRLL
Ga0182039_120314011	3300016422	Soil	MGPACQPDRFPGSVFPFSLDFLVACSLGHYTETRHIKCRMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVV
Ga0126371_119470171	3300021560	Tropical Forest Soil	GQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIKCEMKALWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR
Ga0126371_124467441	3300021560	Tropical Forest Soil	MGPARQPDRLPGSVFSFSLDFLGARSLGHYTGTCHINCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDLLFVVIFGAACAMTIIEAILRLR
Ga0126371_133790831	3300021560	Tropical Forest Soil	PGALFRFSLGLVCVFSSSKATERCHIKFEMKAPRIDPAVPELAALSALAAVGCGLAAAQGDLWFVTVFGAASVVTMIEVVRRLL
Ga0207685_105749171	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LFLFSPGLVGARSSGNYTERCHIKCEMKAPRIDPAVPELAALSGLAAVGCGLAAAQGDLWFVTVFGAASVVTIIEVVRRLL
Ga0207646_108374982	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0209648_103176652	3300026551	Grasslands Soil	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEVVRRLL
Ga0209488_101081204	3300027903	Vadose Zone Soil	VDKGVAPGPLFLFSLGLVGARSSGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEVVRRLL
Ga0318516_102309302	3300031543	Soil	MGYARKPDRFPSPVLLFSLGRLAALSLANYAERCHIKCGMKGPWMDSGVGEVAALSALSALGCGLAVARGDLLFVAIFGAACAVTIIEAIRRLQ
Ga0318516_103796181	3300031543	Soil	LVEYEWGKQASLLVFLALYFLFLLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAI
Ga0318541_100523982	3300031545	Soil	MGYARKPDRFPSPLFLFSLGRRAVRSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318541_103897281	3300031545	Soil	VPMGQAREPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0318538_100860251	3300031546	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGVRELAALSALAALGCGLAAGQGDFLFVVLFGAA
Ga0318538_100895411	3300031546	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALLAPPA
Ga0318538_103553381	3300031546	Soil	MGQAREPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0318538_106345891	3300031546	Soil	ERKPDRFPSPLFLFALGRLDARSLGNHAERCHIKCVMKALWMDPGVPELAALSALAALGCGLAVAQGDLLFVALFGAASVVAIIEAIRRLR
Ga0318571_101320372	3300031549	Soil	LFLVSLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAFFGAASIVTIIEAVRRLR
Ga0318528_100830083	3300031561	Soil	MGYERKPDRFPSPLFLFALGRLDARSLGNHAERCHIKCVMKALWMDPGVPELAALSALAALGCGLAVAQGDLLFVALFGAASVVAIIEAIRRLR
Ga0318573_100181033	3300031564	Soil	MGHERKPDRFPSPLFLFALGRLDARSLGNHAERCHIKCVMKALWMDPGVPELAALSALAALGCGLAVAQGDLLFVALFGAASVVAIIEAIRRLR
Ga0318515_101103002	3300031572	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVLFSAASVVTIIEAILRLR
Ga0310915_100265905	3300031573	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGVRELAALSALAALGCGLAAGQGDFLFVVLFGAASVVTIIEAILRLR
Ga0310915_105667122	3300031573	Soil	PARFPGPLLLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0318555_105422902	3300031640	Soil	MGPACQPDRFPGSVFPFSLDFLVACSLGHYTETRHIKCRMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVLFGAASAVAIIEAILRLR
Ga0318542_100723973	3300031668	Soil	MGYTREPDRFPSPLFLFSLGRLGARSLGNYTERCRIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318542_101036193	3300031668	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAG
Ga0318561_100463131	3300031679	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGVRELAALSALAALGCGLAAGQGDFLFVVLFSAASVVTIIEAILRLR
Ga0318561_100563453	3300031679	Soil	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTERCRIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318574_106069432	3300031680	Soil	RKPDRFPSPLFLFALGRLDARSLGNHAERCHIKCVMKALWMDPGVPELAALSALAALGCGLAVAQGDLLFVALFGAASVVAIIEAIRRLR
Ga0318560_102351782	3300031682	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAVRRLR
Ga0318496_103000021	3300031713	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVLFGAASVVTIIEAILRLR
Ga0318496_103577912	3300031713	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAFFGAASIVTIIEAVRRLR
Ga0306917_102688202	3300031719	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEVIRRLR
Ga0306918_105023741	3300031744	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALVGAASIVTIIEVIRRLR
Ga0306918_105879781	3300031744	Soil	MGQASEPARFPGPLFLVSLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAVRRLR
Ga0318502_109393711	3300031747	Soil	MGQASEPARFPDPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAFFGAASIVTIIEAVRRLR
Ga0318492_105374451	3300031748	Soil	GPLFLVSLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAFFGAASIVTIIEAVRRLR
Ga0318535_100974072	3300031764	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQCDLLFVALFGAASIVTIIEAVRRLR
Ga0318535_102421152	3300031764	Soil	LVSLDLVGARSLGNYTESRHIKCEMKAPWMNPRARELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEVIRRLR
Ga0318526_104762301	3300031769	Soil	VRMGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAI
Ga0318521_104745911	3300031770	Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHVKCEMKALWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR
Ga0318546_101047713	3300031771	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDFL
Ga0318547_106517982	3300031781	Soil	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTGRCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318529_100343861	3300031792	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAF
Ga0318529_101716792	3300031792	Soil	MGQAREPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAI
Ga0318548_105277702	3300031793	Soil	PMGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0318548_105338861	3300031793	Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIECEMKALWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR
Ga0318557_105430971	3300031795	Soil	RVRMGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR
Ga0318523_101299901	3300031798	Soil	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTERCHIKCEMKAPRIDPAVPELAALSALAAVGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318499_101521513	3300031832	Soil	GYARKPDRFPSPLFLFSLGRLGARSLGNYTERCRIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0310917_101888173	3300031833	Soil	PVFLFSLGRLDARSLGNYAERCHIKRELKALWMDPRVRELAALSALAALGCGLAAGQGDLLFLAIFGAASVVTIIEVVRRLL
Ga0318517_102528661	3300031835	Soil	PGPLFLVSLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAFFGAASIVTIIEAVRRLR
Ga0318544_101849591	3300031880	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGVRELAALSALAALGCGLAAGQGDFLF
Ga0306925_101729731	3300031890	Soil	MGPARQPDRFPGSVFPFSLDFLVACSLGHYTETRHIKCRMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVLFGAASAVAIIEAILRLR
Ga0306925_104065312	3300031890	Soil	LFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAVRRLR
Ga0318551_100536653	3300031896	Soil	MGHERKPDRFPSPLFLFALGRLDARSLGNHAERCHIKCVMKALWMDPGVPELAALSALAALGCGLAVAQGDPLFVALFGAASVVAIIEAIRRLR
Ga0318551_102411871	3300031896	Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0318520_100289094	3300031897	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVV
Ga0306923_124116561	3300031910	Soil	MGYTREPDRFPSPLFLFSLGRLGACSLGHYTETRHIKCGMKAPWMDPGLLELAALSALAALGCGLAAGHGDLLFVALFGATSVVAIIEAIRRLR
Ga0306921_100931509	3300031912	Soil	PDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGVRELAALSALAALGCGLAAGQGDFLFVVLFGAASVVTIIEAILRLR
Ga0310912_112558851	3300031941	Soil	LFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVAFFGAASIVTIIEAVRRLR
Ga0310913_105976332	3300031945	Soil	ASEPARFPGPLFLVSLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAVRRLR
Ga0310910_105750421	3300031946	Soil	MGQASEPARFPGPLFLVSLDLVGARSLGNYTESRHIKCEMKAPWMNPRARELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEVIRRLR
Ga0310909_102192281	3300031947	Soil	LFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR
Ga0310909_105981882	3300031947	Soil	PDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVLFGAASVVTIIEAILRLR
Ga0306926_106111851	3300031954	Soil	PGPLFLFSLGRLDARSLGNYAERCHIKRELKALWMDPRVRELAALSALAALGCGLAAGQGDLLFLAIFGAASVVTIIEVVRRLL
Ga0318531_100160425	3300031981	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVL
Ga0306922_101313538	3300032001	Soil	LFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEAIRRLR
Ga0306922_103084994	3300032001	Soil	LFLFSLGRLGARSLGNYTERCRIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318569_101596371	3300032010	Soil	MGYTREPDRFPSPLFLFSLGRLGARSLGNYTERCRIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQDDLWFVTVFGAASLVTIIEAVQRLL
Ga0318507_100436631	3300032025	Soil	MGYARKPDRFPSPLFLFSLGRLGARSLGNYTERCRIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVT
Ga0318559_103556871	3300032039	Soil	MGYAREPDRFPSPLFLFSLGRLDARSLGNYAERCHIKRELKALWMDPRVRELAALSALAALGCGLAAGQGDLLFLAVFG
Ga0318558_104887952	3300032044	Soil	IFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGVRELAALSALAALGCGLAAGQGDFLFVVLFGAASVVTIIEAILRLR
Ga0318532_103820211	3300032051	Soil	SLGRRAVRSLGNYTERCHIKCEMKAPRIDPAVLELAALSALAALGCGLAAAQGDLWFVTVFGAASLVTIIEAVRRLL
Ga0318506_101445132	3300032052	Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLQ
Ga0318570_100266022	3300032054	Soil	MGQASEPARFPGPLFLISLGLVGARSLGNYTESRHIKCEMKAPWMNPGVRELAALSALAALGCGLAAGQGDLLFVALFGAASIVTVIEAIRRLR
Ga0318505_100827863	3300032060	Soil	MGQASEPARFPGPLFLVSLGLVAARSLGNYTESRHIKREMKAPWMNPGVRELAALSALAALGCGLAAAQGDLLFVAIFGAACAVTIIEAIRRLR
Ga0318504_101322442	3300032063	Soil	MGQASEPARFPGPLFLVSLDLGGARSLGNYTESRHIKCEMKAPWMNPRARELAALSALAALGCGLAAGQGDLLFVALFGAASIVTIIEVIRRLR
Ga0306920_1004941021	3300032261	Soil	GDACGRVSPRLHGMGYERKPDRFPSPLFLFALGRLDARSLGNHAERCHIKCVMKALWMDPGVPELAALSALAALGCGLAVAQGDLLFVALFGAASVVAIIEAIRRLR
Ga0318519_100254161	3300033290	Soil	MGPARQPDRLPGSIFPFSLGFLGALSLGHYTGTCHIKCEMKAPWMDPGLRELAALSALAALGCGLAAGQGDFLFVVLFSAASVV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076053

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences