Scaffold Ga0308400_1008020

Overview

Basic Information

• Taxon OID: 3300032045
• Scaffold ID: Ga0308400_1008020
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2870
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015070	Metagenome / Metatranscriptome	257	Y
F033338	Metagenome / Metatranscriptome	177	Y
F040513	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308400_10080202	F040513	GGA	MGALLYALDWLVRELECYYLLKRADSLCDEIDYLESTAFLDEIRQSPEYRSIRSR
Ga0308400_10080203	F015070	GGAG	MEELEQLGFVGRADYIDSQSSWKSPEWKSLNQEFYTVVVDDVLDFLNEYYLPL
Ga0308400_10080204	F033338	GGAGG	MKRTNLHNELYKLAIAMHKYNGRGVKQNLDLLLSQVRARKNVRKNSIR