Scaffold Ga0307487_1056802

Overview

Basic Information

• Taxon OID: 3300032040
• Scaffold ID: Ga0307487_1056802
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 1.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 912
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2944
  • Long. (^o): -156.7154
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307487_10568021	F034190	N/A	SRYRTAADRHSLDRTHSPLLSIHPERIVPTPLHLFLGISNRIILDAFSELLGKERVQTALTAITTVHSAGCGGKSDLYDLNGPEISKWIKRECSATLLSAAAASSALPAATTASHSILSRWLQQLHHCLLRSGDWTAADIDAWRSVVSDIHSNWRAETSIAAFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSGNTAERLRRSLADAALRAVQPFLSDPSSAPSTSF