3300032040: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 1.2

Overview

Basic Information

• IMG/M Taxon OID: 3300032040
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133511 | Gp0321474 | Ga0307487
• Sample Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 1.2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 277280500
• Sequencing Scaffolds: 8
• Novel Protein Genes: 11
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extreme Environments Viral Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → area of sea ice → brine
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2944
  • Long. (^o): -156.7154
  • Alt. (m): N/A
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027599	Metagenome / Metatranscriptome	194	Y
F034190	Metagenome / Metatranscriptome	175	Y
F037502	Metagenome	168	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307487_1020021	Not Available	2318
Ga0307487_1045986	Not Available	1105
Ga0307487_1048469	Not Available	1054
Ga0307487_1054649	Not Available	946
Ga0307487_1054669	Not Available	945
Ga0307487_1056802	Not Available	912
Ga0307487_1065553	Not Available	800
Ga0307487_1105700	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307487_1020021	Ga0307487_10200212	F027599	VVADIFGVIKLIPDPKLVPPVKAEYQFIFPEEAVAPKTTVPVPHLAAGVVPVIIGIALTVAITAVLAGVVHPLAVASA
Ga0307487_1020021	Ga0307487_10200213	F027599	MLEVVKVVPVPKLVPPVKAPYQFIFPEEAVAPKTTVPVPHLAAGVVPVMVGRGLTVAITAVLAAEVHSL
Ga0307487_1020021	Ga0307487_10200214	F027599	MLGVVKLVPVPKLVPPVKAPYQFIFPEEAVAPIPTVPVPHLAAGVVPEIVGIALTVAINAVLAAVVHPLSVAST
Ga0307487_1045986	Ga0307487_10459861	F034190	GSDSWLELQDCRAEGLTPFTGDSAAFPHIWAVLQHLIDTRSAFLNGDWCFINAVLGLMSPSATHPCPICIVSHKNYLHAARYRTPHDRHSLDRTHSPLLIIPPERIVPTPLHLFLGISNRIILDAFSELLGEAVVLEAVQRTKTVHSAGCTGASDLRDLNGPEISKFIKKECSMSALAAAGALSPVADSTKASHSVLSRWLQQLHHSLLRSGDWTADDIDTWRSVVDDIQQHWQSEAHSAPFPKLHMLRHSIDFAERHRFLGRASEAQIESYHASFNALFHKQHRNMSSNTAERLRRSLADAALHAVQPFVQQ
Ga0307487_1048469	Ga0307487_10484691	F034190	ITTVHSAGCGGKSDLYDLNGPEISKWIKKECSASVLTAAAVASSAAASTLPDSTRASHSILSRWLEQLHGALLHCRDWTAAEIDAWRSVVTDIQQHWSAEAHSKPFPKLHMLRHSLEFAERHRFLGRASEAQIESFHASFNTLFHDHHLNQGSNTSERLRRCLADASLRAMQPCLSSPSSAPSTPF
Ga0307487_1054649	Ga0307487_10546494	F037502	AHKMKMIGFTGIGVYSDTHYLDGPHPMFHGDVRPNENMGSPATWGRVEGKYTSLMAAIQSVKLGVNNGT
Ga0307487_1054669	Ga0307487_10546691	F034190	LGVTYSAAGKQHFACLLVYEGSDSWLELQDCRAEGLTPFVGESAAFPHIWAVLQHLIDTRSAFLNGDWCFINAVLGLMSPSATHPCPICIVGKSSLLSSPRYRTPADKHSLDRTHSPLLTIHPERIVPTPLHLFLGISNRIILDALSELLGKERVEAALKAVTTVHSAGCGGKSDLHDLNGAEISKWIKKECSASVLAAAAASSPLPASTTATHSILSRWLTQLHHSLLHAEDWAASDIDAWSSVVNDIQQHWQAEVHSAPFPKLHMLRHTVDFAERHRFLGRASEAQIESFHASFNALFHRQHRNQSSNTAER
Ga0307487_1056802	Ga0307487_10568021	F034190	SRYRTAADRHSLDRTHSPLLSIHPERIVPTPLHLFLGISNRIILDAFSELLGKERVQTALTAITTVHSAGCGGKSDLYDLNGPEISKWIKRECSATLLSAAAASSALPAATTASHSILSRWLQQLHHCLLRSGDWTAADIDAWRSVVSDIHSNWRAETSIAAFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSGNTAERLRRSLADAALRAVQPFLSDPSSAPSTSF
Ga0307487_1065553	Ga0307487_10655531	F034190	RHSLDRTHSPLLIIHPERIVPTPLHLFLGISNRIILDALSELLGKERVETALKAVTTVHSVGCSGKSDLYDLNGQEISKWIKRKCSASVLAAAAATSALPAATRATHSILTRWLQQLHHSLLRAGDWTSADIDAWRTAVSDIHQHWSAEAHSRPFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHRQHRNQSSNTAERLRRSLADAALRAVQPFASS
Ga0307487_1105700	Ga0307487_11057001	F027599	VFDEILGVVKVVPVPKLAPPVAAAYQLIVPAEAVAPRITVPVPHRDPGVVPVMVGMALTVASTADLEPVVQPFDVAST
Ga0307487_1105700	Ga0307487_11057002	F027599	MFDEILGVVKVVPVPKLAPPVAEAYQLIVPVEAVAPRTTVPVPHRDPGVVPVLVGMALTVANIADLGLVVQPFDVAST