NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326512_10072545

Scaffold Ga0326512_10072545


Overview

Basic Information
Taxon OID3300032038 Open in IMG/M
Scaffold IDGa0326512_10072545 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2666
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075545Metagenome / Metatranscriptome118Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0326512_100725452F079361N/AMIYFTIAKNDCGYLIDSISEDYATLKLKFPDEKIYKSDKPIVSIYVIKDQLNEIQD
Ga0326512_100725456F075545AGTAGMIQLVVNVELLREIDERKLINAYARFMYNDESDTTDDNKIKENLIELFDWDKNGDNGLGVYCGHFEEIKRKDWEFLINFIKENSYEIELISRPYVKEKKLESIKIINSTLEEKELHNIERFTDNNYQVSGRGKKAKPCIYEGREYKSRQECLYKEGLTKYQLWIYLKNTNQI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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