Scaffold Ga0326512_10026698

Overview

Basic Information

• Taxon OID: 3300032038
• Scaffold ID: Ga0326512_10026698
• Source Dataset Name: Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4295
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5357
  • Long. (^o): -121.7593

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326512_100266985	F057035	GAG	MTEKEFLEKRIPIWLEGDDLHISTPSSSDKNDFHAFLSKKYGYNALFAIRGYYWPESHVQLYIGEYETPNCTILVAPYIFSYFPDIKYVGFGCYIGKKGEIWEPKVKIMRGKT
Ga0326512_100266987	F064301	N/A	MAKTKGITPRTIRIPTKVQPIWQIGILFPDGKKISKPKCTLNDIFDTYFIGLDKYLSKGFTAEELLNKYKETFETKGIKIAIHYIDSWGHTWKGKVAWPRESKFIEYLNKRLNENYS
Ga0326512_100266989	F079361	N/A	MIYFTVAKNECGYLIDSISESYEVLRYKFPDEKIYKSDKPIVSIYVIKDELNEI