Scaffold Ga0315327_10180218

Overview

Basic Information

• Taxon OID: 3300032032
• Scaffold ID: Ga0315327_10180218
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1323
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315327_101802181	F049924	N/A	LIAKDVPVHLKSLFEGQNLRFRGRGSRVKAVERVMSSKALRTKYDAGPGLLARFTQDLPLELADRMSVYSR
Ga0315327_101802182	F049037	GGAG	MNESPCDTCHNYWVCVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPQTITVRELSERCGFGKETNKLKHWLGLRVFPLIEDPLGFYFLRHLDGAIEDLHEGKSSKRLRHAKAACGQVVLEAKVRESTTRQYDHLGAVVRRQMGRNLAGVRQQEDPGES
Ga0315327_101802183	F060975	AGGAG	MGKTIRKNPVARNSEKFNKPKTIRDRKKDFYRPDSKREFEEAIEDMGFDEHNRKDAIIAQYQDDLARSQEDGWPYED
Ga0315327_101802184	F097503	AGGAG	MDGHTRTEMDCTTEAVVLFEDVVDVFEHRMIEGCIANEFKCTYNADKGEFIAEINGKYYVAMTREKK