Scaffold Ga0315272_10000279

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10000279
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24981
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (38.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F005113	Metagenome / Metatranscriptome	411	Y
F009125	Metagenome	322	Y
F013396	Metagenome	271	N
F014606	Metagenome	261	Y
F019100	Metagenome / Metatranscriptome	231	Y
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_1000027910	F005113	GAGG	MTKDEHKHAIVTQLQQQSLNLLVDSLAAALAEIEQLKAAAADKPTP
Ga0315272_1000027911	F013396	N/A	VNLKRSLLLAALALGLVVVLGLALRSERVLTAGLPLRIVAKTQDEARTLAGLGAVAVLGTGSMAPYIAAAPAGTDPLATVMAYAVPSTSLRYTDITAGALVIYSINYVAGSNTMHQAAQLDAGGWIMTGLGNKAYENKVRVTAENFVGIVSRVYVWTP
Ga0315272_1000027914	F000273	GAGG	MSDEGSKHALIEKAAFAVLPILFSCVVYLMSSLASISHEVTVLRQQVSLVVTSDNKQATNTGAELAREKLRQDLEKEIQHNRDMILENRTSIAVITERIGQFKK
Ga0315272_1000027915	F009125	GGA	MNTDQTKAILTAATPAAAMVSLSQVNEVAALVGTLLGIAFLLWRWRREAQKKD
Ga0315272_1000027923	F100667	AGG	MISISADTKKLEFALARLADAAKVDLGLVVKQEAAYVAKAVMQITPPTGDKTKKGATVATVTGGEITKTKASGLSTNARKQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGQHETMGVSLGNEGGKKIRIYRKFWQQSASIGTMRAFHFANRTERGRRKQVTRSLVGRWAVQDQMWVSEQAANAYLKHTQKKVGLAKAGFAAAAMACGVRVPSWIRKHMAKAGNAQVQFGANPFVVARTTGNQIPDLQRVVDSALKIRYKITISKYRAVLANRAVNLGFAKVKGGMVIPKET
Ga0315272_1000027924	F014606	N/A	MSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFTAESGTYLIDDLFDTGSAAVEAAVLADVTLGGQCRDLHLNSVDYVIEPDEDKRFGTARHTFNCIYLTTD
Ga0315272_100002793	F019100	N/A	MTDPEQSPSEILARRNVQNIAVKLKAGKTLTTSERKALNDFQTGQLDGWVKDLSTLAKELGLSRQAIYDARNRFPDAPKKHEDGRRENLAAWQQFCAENVIGKDVATKNLAELKAELMREQIRLARSKNEREAGDVIDREVVEAMLVTLGQKLNLLLRLKLEVELGPRGVGMNAAELNVEGGVILGEIREVINANIATFEGEALDRSREGIA