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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032006 Open in IMG/M |
| Scaffold ID | Ga0310344_10039731 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3756 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.7656 | Long. (o) | -158.2256 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041251 | Metagenome / Metatranscriptome | 160 | Y |
| F049037 | Metagenome / Metatranscriptome | 147 | N |
| F049924 | Metagenome / Metatranscriptome | 146 | N |
| F097503 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310344_100397312 | F041251 | N/A | MKEYQIQDMTEIAEAIKSGDPAENDIGTVKDGFFWFPDEMAWATQWQKDKEQDSPDGYFAMLLNPDIFEDEEDDEEIMAGIEYWWHRSQIYSAAYLINNKPLVASRYTEDIAADSLRDLLRMQNEVKESFAEKGIKVGIDAKPKDIWMVIRTTAQNIHDNVRGIH |
| Ga0310344_100397316 | F097503 | AGGAG | LAIRGLDMDCDTFDGIVEMFEQRMMEGCIANEFKCTYNIEKGEFIAEIDGKYYVAMTREK |
| Ga0310344_100397318 | F049037 | GGAG | MTESPCDTCHNYWLCMEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLRTFPLIEDPLGFYFIRHIDGTIENTYTGKSSKRLRNAQAACREVVLEAKVRESTARTQNNVGRVVQREMGRNLARVCEQEDPGES |
| Ga0310344_100397319 | F049924 | N/A | RLIAKDVPVHLKGLFEGQNLRFRGRGSRKRAVDIVMNSKKLRDKYGTNGLLARFNQDLPLEFADRMSVYCR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |