Scaffold Ga0310344

Basic Information
Taxon OID	3300032006 Open in IMG/M
Scaffold ID	Ga0310344_10000609 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032006 Open in IMG/M

Scaffold ID

Ga0310344_10000609 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27947
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (86.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27947

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (86.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7656	Long. (^o)	-158.2256	Alt. (m)	Depth (m)	200
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7656

Long. (^o)

-158.2256

Alt. (m)

Depth (m)

200

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F049037	Metagenome / Metatranscriptome	147	N
F049696	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F070020	Metagenome / Metatranscriptome	123	Y
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_1000060913	F049696	GAGG	MSGIELKPMKIHTQKGKRRLWLEQQRYGLDGFEPGSSFKVTYHADSIEIESDPEGSNKVFTRVKKPSKLHPTERKFAIVSLHNSKLKAIFGDTADGVDTECRYEQMPGYLKIWPANLAAKIEARVDEFAESLAQAA
Ga0310344_100006092	F041251	N/A	MKEYNINDVEEIAEAIKSGERVENDIGTVIDGFFWFPDEMAWAMQWQKDEKQDSPDLYFAMLLNPDVFENEDDDSEIMAGIEYWWHRSQIYAAAYLVNNKPLVAHRYTEDVAKDSLRELLNMQGQVKEAFAAQGIDFGPEAKPKDIWMVVRTTAQNIHNNVRGIH
Ga0310344_1000060940	F070020	N/A	VSFIVGIARIAHWFLIPFLVVWMTIAPNDMLPQCLSDAKVHIAEQFRGSYFGTN
Ga0310344_100006096	F097503	GAGG	MDCDTFDGIVEMFEQRVMEGCIANEFKCTYNEEKGEFIAEIDGKYYVAMTREKK
Ga0310344_100006097	F060975	AGGAG	MGKTIRRNPVAKNSEQFNKPKTIRDKKKDFYRPDSKRDLEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED
Ga0310344_100006098	F049037	N/A	MENNETMSESPCDTCHNYWICVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPQTITVRELSERCGFGKETNKLKHWLGLRVFPLIEDPLGFYFLRHLDGAIESTYTGKSSKRLRNAQAACREVVLEAKVRESTARAQNNVGRVVQREMGRNVAAIRGDEDQGEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310344_10000609

Overview

Ecosystem & Geography

Associated Families

Sequences