Scaffold Ga0315274_10333936

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10333936
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1791
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035668	Metagenome / Metatranscriptome	171	Y
F059759	Metagenome / Metatranscriptome	133	Y
F059760	Metagenome / Metatranscriptome	133	N
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_103339363	F035668	AGG	MSCNNCINGNCTCVRVNAVNIFSVDYKAGKSEGQRAEATRTADALVELENKGVINNAQLQAILDLILEKLTDQVDIW
Ga0315274_103339364	F059760	GGA	MNETTDAITKAIQDSRDNAMEAVLSIIESYKRLQMPEKPKDMYDAGAKDAIDTLTVHLTQFADGLKAGRK
Ga0315274_103339367	F102815	AGG	MMREPEELFLDAIAAYKAWIACGKDFLNHADLYDVWDDAVVAYGQSIFLERNRAVHQVLQGLEVIR
Ga0315274_103339368	F059759	AGG	MSKEQIWALLEIYRQMQVANTMIQYNDAFEELHLFVEENCLKVGA