Scaffold Ga0308176_10287073

Overview

Basic Information

• Taxon OID: 3300031996
• Scaffold ID: Ga0308176_10287073
• Source Dataset Name: Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1596
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F077140	Metagenome / Metatranscriptome	117	Y
F094845	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308176_102870731	F077140	N/A	RLSLEDAAAGIKTIYTRLLDQAWSDAAARGQKLPPESQKAIPPTVPGQQ
Ga0308176_102870733	F094845	AGGAGG	MGMPTGDSPQTAEQYYDYLQAHHQTDHEVATWHVHWIDLAWLWGFVIVLVLGILFWVWQYRTTLQRGEGRGAMYPVDTFGGYTTEQAGPATLFFILLTVVLTGFAVALIVGHLVWGQKF
Ga0308176_102870735	F000280	GGAG	MEDPKPARPLAGYRDVGEEVRHSRRAQNRAWVILAVLVVLYLAWTLTVYFLEPGLR
Ga0308176_102870736	F001935	N/A	MWVQHLSSLQFLSYVAFFAVVIVVLMRLLPGQRPPLRTEPYSDAELGAQDMRLGKYFVAGGIFLVIGGVHMAAKNIPWAAEWLARGGYAGHLVRDLSNTHIMI