Scaffold Ga0307479_10031309

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307479_10031309

Scaffold Ga0307479_10031309

Overview

Basic Information
Taxon OID	3300031962 Open in IMG/M
Scaffold ID	Ga0307479_10031309 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5072
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003701	Metagenome / Metatranscriptome	473	Y
F075880	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_100313092	F075880	GGAG	MAFVYDAELVRLICRDIDKAKDDPQKEQELLSLLQAVIREDQEEMRIRMAFLAKKYAAAISDANAAD
Ga0307479_100313093	F003701	N/A	MRTVWLVFCLLLAGCAAKKQPVTATPPPIRSQLPPPTAEIIEHCVIVKQENANTVTCSCLPVTTVIDSKTGHTKLVCKKMKEEK

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