Metagenome / Metatranscriptome Family F075880

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075880
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	66 residues
Representative Sequence	VYDVELVRLICRDINNAKDDPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD
Number of Associated Samples	77
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.49 %
% of genes near scaffold ends (potentially truncated)	22.88 %
% of genes from short scaffolds (< 2000 bps)	79.66 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.508 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (54.237 % of family members)
Environment Ontology (ENVO)	Unclassified (49.153 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.475 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.87% β-sheet: 0.00% Coil/Unstructured: 39.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF12838	Fer4_7	4.24
PF11304	DUF3106	1.69
PF08281	Sigma70_r4_2	1.69
PF07589	PEP-CTERM	1.69
PF13490	zf-HC2	0.85
PF08447	PAS_3	0.85
PF13544	Obsolete Pfam Family	0.85
PF01344	Kelch_1	0.85
PF07479	NAD_Gly3P_dh_C	0.85
PF13751	DDE_Tnp_1_6	0.85
PF00990	GGDEF	0.85
PF04456	DUF503	0.85
PF13671	AAA_33	0.85
PF01590	GAF	0.85
PF02880	PGM_PMM_III	0.85
PF00117	GATase	0.85
PF01165	Ribosomal_S21	0.85
PF04664	OGFr_N	0.85
PF04226	Transgly_assoc	0.85
PF05137	PilN	0.85
PF03626	COX4_pro	0.85
PF07646	Kelch_2	0.85
PF13561	adh_short_C2	0.85
PF00730	HhH-GPD	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG3166	Type IV pilus assembly protein PilN	Cell motility [N]	1.69
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.85
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.85
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.85
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.85
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.85
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.85
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.85
COG1550	Stress-induced protein YlxP, DUF503 family	Function unknown [S]	0.85
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.85
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.85
COG3055	N-acetylneuraminic acid mutarotase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.51 %
Unclassified	root	N/A	19.49 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.51 %
Unclassified	root	N/A	19.49 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.51 %
Unclassified	root	N/A	19.49 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	63.56 %
Unclassified	root	N/A	19.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	50.85 %
Unclassified	root	N/A	19.49 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.85 %
Unclassified	root	N/A	19.49 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.85 %
Unclassified	root	N/A	19.49 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.85 %
Unclassified	root	N/A	19.49 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10285627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300002245\|JGIcombinedJ26739_100949085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300005167\|Ga0066672_10206255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300005174\|Ga0066680_10146631	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1474	Open in IMG/M
3300005176\|Ga0066679_10785973	Not Available	609	Open in IMG/M
3300005176\|Ga0066679_10946391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300005177\|Ga0066690_10568489	Not Available	758	Open in IMG/M
3300005445\|Ga0070708_100052363	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3620	Open in IMG/M
3300005445\|Ga0070708_101156421	Not Available	724	Open in IMG/M
3300005445\|Ga0070708_102163783	Not Available	514	Open in IMG/M
3300005468\|Ga0070707_100880097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300005555\|Ga0066692_10064236	All Organisms → cellular organisms → Bacteria	2084	Open in IMG/M
3300005568\|Ga0066703_10907979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300006052\|Ga0075029_100358504	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300006797\|Ga0066659_11820880	Not Available	515	Open in IMG/M
3300006800\|Ga0066660_10038591	All Organisms → cellular organisms → Bacteria	3014	Open in IMG/M
3300007258\|Ga0099793_10027188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2400	Open in IMG/M
3300007258\|Ga0099793_10155045	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300007265\|Ga0099794_10442416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300007265\|Ga0099794_10806347	Not Available	502	Open in IMG/M
3300007788\|Ga0099795_10647169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300009038\|Ga0099829_10637513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300009038\|Ga0099829_11100159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300009088\|Ga0099830_10456308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300009088\|Ga0099830_10988510	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300009137\|Ga0066709_104086041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300009143\|Ga0099792_11141063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300010159\|Ga0099796_10395286	Not Available	605	Open in IMG/M
3300011269\|Ga0137392_10504100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1005	Open in IMG/M
3300011269\|Ga0137392_10504510	Not Available	1005	Open in IMG/M
3300011269\|Ga0137392_10561203	Not Available	948	Open in IMG/M
3300011269\|Ga0137392_11628155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300011270\|Ga0137391_10333831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1304	Open in IMG/M
3300011270\|Ga0137391_10695540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300011270\|Ga0137391_11167730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300011271\|Ga0137393_10093769	All Organisms → cellular organisms → Bacteria	2438	Open in IMG/M
3300011271\|Ga0137393_10101751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2347	Open in IMG/M
3300011271\|Ga0137393_10189077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1734	Open in IMG/M
3300011271\|Ga0137393_10244538	Not Available	1522	Open in IMG/M
3300011271\|Ga0137393_10504807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300012189\|Ga0137388_10001272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15154	Open in IMG/M
3300012189\|Ga0137388_10245172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1629	Open in IMG/M
3300012189\|Ga0137388_11111410	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300012199\|Ga0137383_10370936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300012200\|Ga0137382_10675337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300012202\|Ga0137363_10218978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1535	Open in IMG/M
3300012202\|Ga0137363_10323797	Not Available	1270	Open in IMG/M
3300012202\|Ga0137363_10389553	All Organisms → cellular organisms → Bacteria → Acidobacteria	1159	Open in IMG/M
3300012203\|Ga0137399_10411969	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300012205\|Ga0137362_11384212	Not Available	589	Open in IMG/M
3300012205\|Ga0137362_11793325	Not Available	500	Open in IMG/M
3300012207\|Ga0137381_11385232	Not Available	595	Open in IMG/M
3300012209\|Ga0137379_11185422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300012211\|Ga0137377_10438626	Not Available	1244	Open in IMG/M
3300012211\|Ga0137377_10790713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300012211\|Ga0137377_11810036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300012361\|Ga0137360_10251666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1451	Open in IMG/M
3300012361\|Ga0137360_11120045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300012362\|Ga0137361_10074181	All Organisms → cellular organisms → Bacteria	2891	Open in IMG/M
3300012362\|Ga0137361_10090582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2637	Open in IMG/M
3300012362\|Ga0137361_10201295	All Organisms → cellular organisms → Bacteria → Acidobacteria	1801	Open in IMG/M
3300012362\|Ga0137361_11111964	Not Available	711	Open in IMG/M
3300012363\|Ga0137390_10866850	All Organisms → cellular organisms → Bacteria → Acidobacteria	859	Open in IMG/M
3300012582\|Ga0137358_10887967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300012683\|Ga0137398_10012608	All Organisms → cellular organisms → Bacteria	4343	Open in IMG/M
3300012683\|Ga0137398_10332918	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300012917\|Ga0137395_10519005	All Organisms → cellular organisms → Bacteria → Acidobacteria	858	Open in IMG/M
3300012917\|Ga0137395_10894939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300012918\|Ga0137396_10411683	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300012923\|Ga0137359_10020588	All Organisms → cellular organisms → Bacteria → Acidobacteria	5597	Open in IMG/M
3300012923\|Ga0137359_10470047	Not Available	1111	Open in IMG/M
3300012923\|Ga0137359_11359058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300012925\|Ga0137419_10403974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1068	Open in IMG/M
3300015241\|Ga0137418_10186812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1801	Open in IMG/M
3300015241\|Ga0137418_10295729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1356	Open in IMG/M
3300019888\|Ga0193751_1000216	All Organisms → cellular organisms → Bacteria	51088	Open in IMG/M
3300020579\|Ga0210407_10051520	Not Available	3074	Open in IMG/M
3300021168\|Ga0210406_10059777	All Organisms → cellular organisms → Bacteria → Proteobacteria	3308	Open in IMG/M
3300021478\|Ga0210402_10000029	All Organisms → cellular organisms → Bacteria	129720	Open in IMG/M
3300022533\|Ga0242662_10090428	Not Available	859	Open in IMG/M
3300025922\|Ga0207646_10202177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1795	Open in IMG/M
3300026309\|Ga0209055_1134406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	900	Open in IMG/M
3300026340\|Ga0257162_1055264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300026482\|Ga0257172_1085083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300026514\|Ga0257168_1068666	Not Available	782	Open in IMG/M
3300026551\|Ga0209648_10045170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3797	Open in IMG/M
3300026552\|Ga0209577_10054308	All Organisms → cellular organisms → Bacteria	3369	Open in IMG/M
3300026557\|Ga0179587_10193324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1286	Open in IMG/M
3300027587\|Ga0209220_1018862	All Organisms → cellular organisms → Bacteria	1840	Open in IMG/M
3300027643\|Ga0209076_1232014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300027645\|Ga0209117_1083309	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300027645\|Ga0209117_1110996	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300027660\|Ga0209736_1052025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1164	Open in IMG/M
3300027674\|Ga0209118_1010741	All Organisms → cellular organisms → Bacteria → Acidobacteria	3127	Open in IMG/M
3300027738\|Ga0208989_10068166	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300027903\|Ga0209488_10339775	Not Available	1117	Open in IMG/M
3300027903\|Ga0209488_10975138	Not Available	589	Open in IMG/M
3300028047\|Ga0209526_10796670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300028536\|Ga0137415_10161966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2071	Open in IMG/M
3300028536\|Ga0137415_11339754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300030730\|Ga0307482_1268319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300030848\|Ga0075388_11268932	Not Available	527	Open in IMG/M
3300030991\|Ga0073994_12422886	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3869	Open in IMG/M
3300031057\|Ga0170834_100186207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300031231\|Ga0170824_110251961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300031231\|Ga0170824_122720575	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300031446\|Ga0170820_13789486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300031474\|Ga0170818_113298542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	628	Open in IMG/M
3300031718\|Ga0307474_10003770	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10934	Open in IMG/M
3300031753\|Ga0307477_10000279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	65119	Open in IMG/M
3300031753\|Ga0307477_10061899	All Organisms → cellular organisms → Bacteria → Acidobacteria	2579	Open in IMG/M
3300031753\|Ga0307477_10782593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300031754\|Ga0307475_10143709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1891	Open in IMG/M
3300031754\|Ga0307475_10205709	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300031823\|Ga0307478_10750079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300031962\|Ga0307479_10031309	All Organisms → cellular organisms → Bacteria → Acidobacteria	5072	Open in IMG/M
3300031962\|Ga0307479_10539613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1149	Open in IMG/M
3300031962\|Ga0307479_10925338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.15%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.15%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.29%
Loam	Environmental → Terrestrial → Soil → Loam	11.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	54.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.32%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.69%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_102856272	3300001593	Forest Soil	VYNVELVRMICRDINNAKDNPQKEQELISLLQAVIREDQEEVRLRMAFLAKKYAAVISDAKAAD*
JGIcombinedJ26739_1009490852	3300002245	Forest Soil	VYDVELVRLICRDINNAKDDPQKERELLSLLQAVIREDQEEVRLRMAFLAKKYAAVISDTSAAD*
Ga0066672_102062552	3300005167	Soil	VRILLPWPGRNGIRLYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0066680_101466312	3300005174	Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0066679_107859731	3300005176	Soil	LYNEELVRQICRQLNNAKDDAEKERELLSLLRAVIQENQEDARTRMEFLKKKYPQVISDAKAAD
Ga0066679_109463911	3300005176	Soil	DINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0066690_105684892	3300005177	Soil	LYNEELVRQICRQLNNAKDDAEKERELLSLLRAVIQENQEDARTRMEFLKKKYPQVISDAKAAD*
Ga0070708_1000523631	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLLPWPGRNGVRVYDVELVCLICRDINNAKDDPRKEQELISLLQAVIREDQEEMRIRMAFLAKKYAAVISDAKAAD*
Ga0070708_1011564211	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LYNLELVQQICRDLNNAKDDPGKERELLSLLRAVIQDDQEDIQTRMAFLKKKYPQVISDANAAD*
Ga0070708_1021637831	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VYKVELVLQICRDINNAKDDPQKEQELISLLKAVIQEIQEEVRTRMEFLKNKYPQVISDAKAAD*
Ga0070707_1008800972	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VYDAEVMCLICRDINNAKGDPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKY
Ga0066692_100642362	3300005555	Soil	LYDVEFVRLICRDINNAKEDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0066703_109079791	3300005568	Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKA
Ga0075029_1003585042	3300006052	Watersheds	VYNVELVRQLRRDINNAKDDAEKELELVSLLQAVIKENQEEVRIRMAFLANKYGNAIGDAQAAD*
Ga0066659_118208801	3300006797	Soil	LYNLELVRQICRELNNAKDDPEKERELLSLLRAVIQDDQEDIRTRMEFLVKKYPQVISDAKAAD*
Ga0066660_100385913	3300006800	Soil	VYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0099793_100271884	3300007258	Vadose Zone Soil	LYDAEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0099793_101550451	3300007258	Vadose Zone Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLKAVIREDQEETRTRMAFLGKKYAAVISDAKAAD*
Ga0099794_104424162	3300007265	Vadose Zone Soil	VYDVEFVRLICRDINNAKEDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKASDAKAAD*
Ga0099794_108063471	3300007265	Vadose Zone Soil	VELVRLICCDMNNAKDDPRKEQELISLLQAVIQENQEEMRIRMAFLAKKYAAVISDANAAD*
Ga0099795_106471692	3300007788	Vadose Zone Soil	LYDVEFVRLICRHINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDANAAD*
Ga0099829_106375131	3300009038	Vadose Zone Soil	VYDVELVRLICLDINNAKDDPQKEQELISLLQAVIREDQEEMRIRMAFLAKRYAAVISDAKAAD*
Ga0099829_111001592	3300009038	Vadose Zone Soil	VYDAELVRLICRDINSAKDNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAAISDAKAAD*
Ga0099830_104563082	3300009088	Vadose Zone Soil	MGEFLLSGRRRDGIRVYNVELVQQICRDINNAKDDPQKEQELISLLQAVIREDQEEIRLRMAFLAKRYAAVISDAKAAD*
Ga0099830_109885102	3300009088	Vadose Zone Soil	VYDVELVRLICLDINNAKDDPQKEQELISLLRAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD*
Ga0066709_1040860411	3300009137	Grasslands Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAK
Ga0099792_111410631	3300009143	Vadose Zone Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLGKKYAAVISDAKAAD*
Ga0099796_103952861	3300010159	Vadose Zone Soil	VYDVEFVRLICRHINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLGKKYAAVISDAKASDAKAAD*
Ga0137392_105041002	3300011269	Vadose Zone Soil	VYNVELARLICRDINNAKDDPQKEQELISLLRAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD*
Ga0137392_105045101	3300011269	Vadose Zone Soil	LELVQQICRDLNNTKDDPEKERELLSLLRAVIQDDQEDIQTRMAFLKKKYPQVISDAKAAD*
Ga0137392_105612032	3300011269	Vadose Zone Soil	LYNLELVRQICRDLNNAKDDAEKERELLSLLRAVIQENQEDARTRMEFLKKKYPQVISDAKAAD*
Ga0137392_116281551	3300011269	Vadose Zone Soil	VYNVELVRQICRDINNAKDNPEKQEELLSLLQAVIREDQEEIRVRMAFLTQKYARVISESKAAD*
Ga0137391_103338311	3300011270	Vadose Zone Soil	VYDVELVRLICRDINSAKDNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAAISDAKAAD*
Ga0137391_106955401	3300011270	Vadose Zone Soil	VYDVELVCLICRDINNAKGDPQKEQELISLLQTVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD*
Ga0137391_111677302	3300011270	Vadose Zone Soil	RDLNNAKDDAEKERELLSLLRAVIQENQEDARTRMEFLKKKYPQVISDAKAAD*
Ga0137393_100937691	3300011271	Vadose Zone Soil	MGEFLLSGRRRDGIRVYNVELVQQICRDINNAKDDPQKEQELISLLQAVIQENQEEVRTRMEFLKKKYPQVISDAKAAD*
Ga0137393_101017511	3300011271	Vadose Zone Soil	VYDVELVRLICRDINSAKDNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVI
Ga0137393_101890773	3300011271	Vadose Zone Soil	VELVRLICRDINSAKDNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAAISDAKAAD*
Ga0137393_102445384	3300011271	Vadose Zone Soil	MGESSYSGRGREGIRVYNVELVRLICRDINNAKDDPQKEQELISLLQAVIKEDQEDMRIRMAFLAKKYAAVISDAKAAD*
Ga0137393_105048071	3300011271	Vadose Zone Soil	VYDVELVCLICRDINNAKGDPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVI
Ga0137388_1000127211	3300012189	Vadose Zone Soil	VYDVELVRLICLDINNAKDDPQKEQGLISLLQAVIREDQEEMRIRMAFLAKRYAAVISDAKAAD*
Ga0137388_102451722	3300012189	Vadose Zone Soil	MGEYSYSGRGREGIRVYNVELVRLICRDINNAKDDPQKEQELISLLQAVIKEDQEDMRIRMAFLAKKYAAVISDAKAAD*
Ga0137388_111114101	3300012189	Vadose Zone Soil	EKERELLSLLRAVIQENQEDARTRMEFLKKKYPQVISDAKAAD*
Ga0137383_103709362	3300012199	Vadose Zone Soil	VYDVEFVRLICRDINNAKEDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0137382_106753371	3300012200	Vadose Zone Soil	LYNEELVRQICRQLNNAKDDGEKERELLSLLRAVIQDNHEEARTRMEFLKKKYPQVISDAKAAY*
Ga0137363_102189781	3300012202	Vadose Zone Soil	VYNVELVRKLCGDINNAKGDPEKQEELLSLLQAVIRDDQEEVRVRLAFLTKKYASVISESKAAD*
Ga0137363_103237972	3300012202	Vadose Zone Soil	MGESSYYSGRGRDGIRLYNVELVRLICRDINNAKDDPQKEQELISLLKAVIKEDQEDMRIRMAFLAKKYAAVISDAKAAD*
Ga0137363_103895532	3300012202	Vadose Zone Soil	LYNEELVRQICRQLNNAKDDAEKERELLSLLRAVIQDNHEEARTRMEFLKKKYPQVISDAKAAD*
Ga0137399_104119692	3300012203	Vadose Zone Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLRAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0137362_113842121	3300012205	Vadose Zone Soil	MGEFLLSGRRRDGIRVYNVELVQQICRDINNAKGDPQKEQELISLLQAVIQENQKEVRTRIEFLKKKYPQVISDAKAAD*
Ga0137362_117933252	3300012205	Vadose Zone Soil	VYDAELVRLICRDINSAKDNPQKEQELITLLQAVIKEDHEEMRIRMAFLARKYAAVISDAKAAD*
Ga0137381_113852321	3300012207	Vadose Zone Soil	LYNLELVQQICRDLNNTKDDPEKERELLSLLRAVIGDDQEDIRTRMEFLKKKYPQVISDAKAAD*
Ga0137379_111854221	3300012209	Vadose Zone Soil	FLYSAIAAGHKRMPHHSGRGLDGIRVYNVELVRLICRNVNNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0137377_104386261	3300012211	Vadose Zone Soil	KEELVRQIWRELNNAKDDGEKERELLSLLRAVIQENQEEARTRMEFLKKKYPQVISDAKAAD*
Ga0137377_107907131	3300012211	Vadose Zone Soil	VYDVELVRLICRDINNAKGNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD*
Ga0137377_118100361	3300012211	Vadose Zone Soil	MPHHSGRGLDGIRVYNVELVRLICRNVNNAKDDPQKEQELVSLLQAVIQENQEEIRIRMAFLAKKYAAIISD
Ga0137360_102516665	3300012361	Vadose Zone Soil	CGDINDAKRDPEKQEELLSLLQAVIRDDQDEVRVRIAFLTKKYASVISESKAAD*
Ga0137360_111200452	3300012361	Vadose Zone Soil	MGESSYYSGRGRDGIRLYNVELVRLICRDINNAKDDPQKEQELISLLRAVIKEDQEEVRVRMAFLAKKYAAVISDA
Ga0137361_100741811	3300012362	Vadose Zone Soil	CRDINNAKDDPQKEQELISLLQAVIQENQEEVRTRMEFLKKKYPQVISDARAAD*
Ga0137361_100905824	3300012362	Vadose Zone Soil	VYDVELVRLICRDINNAKDDSQKEQELISLLQAVIQENQEEMRIRMAFLAKKFAAVISDAKAAD*
Ga0137361_102012952	3300012362	Vadose Zone Soil	VYDVELVRLICRDINNAKGNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYTAVISDAKAAD*
Ga0137361_111119642	3300012362	Vadose Zone Soil	CRDINNAKDDPQKEQELISLLQAVIQENQEEVRTRMEFLKRKYPQVISDAKAAD*
Ga0137390_108668501	3300012363	Vadose Zone Soil	DRHLYNLELVRQICRDLNNAKDDAEKERELLSLLRAVIQENQEDARTRMEFLKKKYPQVISDAKAAD*
Ga0137358_108879671	3300012582	Vadose Zone Soil	RDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0137398_100126081	3300012683	Vadose Zone Soil	VYNVEFVRQLCRNINEAKGDFEKEEELLSLLQAVIKENQEEVRIRMAFIARKYASVISDAKAAD*
Ga0137398_103329182	3300012683	Vadose Zone Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKASDAKAAD*
Ga0137395_105190051	3300012917	Vadose Zone Soil	ICRDINNAKDDPQKEQELISLLQAVIQENQEEVRTRMEFLKKKYPQVISDAKAAD*
Ga0137395_108949392	3300012917	Vadose Zone Soil	VYDAELVRLICRDINSAKDNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD*
Ga0137396_104116832	3300012918	Vadose Zone Soil	LYDVEFVRLICRDINNAKDDPQKEQELVSLLRAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD*
Ga0137359_100205889	3300012923	Vadose Zone Soil	MRQICRELNNAKDDAEKERELLSLLRAVIQENQEEARTRMEFLKKKYPQVISDAKAAD*
Ga0137359_104700472	3300012923	Vadose Zone Soil	MGEFLLSGRRRDGIRVYNVELVQQICRDINNAKDDPQKEQELISLLQAVIQENQEEVRTRMEFLKRKYPQVISDAKAAD*
Ga0137359_113590582	3300012923	Vadose Zone Soil	VYNVELVRQICRDINNAKDNPEKQEELLSLLQAVIREDQEEIRVRLAFLTKKYASVISESKAAD*
Ga0137419_104039742	3300012925	Vadose Zone Soil	VYNVELVQLICSDINNAKDDPQKEQELISLLQAVIKEDQEEVRVRMAFLAKKYAAVISDAKAAD*
Ga0137418_101868122	3300015241	Vadose Zone Soil	VYNEELVRQICRQLNNAKDDGEKERELLSLLRAVIQENQEEARTRMEFLKKKYPQVISDAKAAD*
Ga0137418_102957292	3300015241	Vadose Zone Soil	VELVRLICSDINNAKDDPRKEQELISLLQAVIQENQEEMRIRMAFLAKKYAAVISDANAAD*
Ga0193751_100021638	3300019888	Soil	VYDVELVRLICLDINNAKDDPQKEQELISLLQAVIREDQEEMRIRMAFLAKRYAAVISDAKAAD
Ga0210407_100515202	3300020579	Soil	MPHHSGRGKNGIGVYNVDLVRQLCADITSEKDPQKEQELLSLLQAIIREDQEEVRIRMAFLAKQYAFAISDAKAAD
Ga0210406_100597774	3300021168	Soil	MPHHSGRGKNGIRVYNVDLVRQLCADITSEKDPQKEQELLSLLQAIIREDQEEVRIRMAFLAKQYAFAISDAKAAD
Ga0210402_1000002927	3300021478	Soil	VYNVDLVRQLCADITSEKDPQKEQELLSLLQAIIREDQEEVRIRMAFLAKQYAFAISDAKAAA
Ga0242662_100904282	3300022533	Soil	MPHHSGRGKNGIRVYNVDLVRQLCADITSEKDPQKEQELLSLLQAIIREDQEEVRIRMAFLAKQYAFAISDAKAAA
Ga0207646_102021772	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MCLICRDINNAKGDPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD
Ga0209055_11344061	3300026309	Soil	LYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD
Ga0257162_10552641	3300026340	Soil	ANRRRILLTLAGRGVRVYDVELVRLICRDINSAKDNPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVMSDANAAD
Ga0257172_10850831	3300026482	Soil	VYDVELVRLICRDINNAKDDPQKEQELISLLQAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD
Ga0257168_10686662	3300026514	Soil	VYDVELVRLICRNINNAKDDPQKEQELLSLLQAIIREAQEEVRLRMVFLAKQYALAISDAKAAD
Ga0209648_100451703	3300026551	Grasslands Soil	VYNVELVRLICRNINNAKDDPQKEQELISLLQAVIQENQEEMRVRMAFLAKKYAAVISDAKAAD
Ga0209577_100543086	3300026552	Soil	VRILLPWPGRNGIRLYDVEFVRLICRDINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD
Ga0179587_101933241	3300026557	Vadose Zone Soil	VYDVEFVRLICRHINNAKDDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDARASDAKAAD
Ga0209220_10188621	3300027587	Forest Soil	VELVRLICRDIHNATDDPQKEQELLSLLRAVIREDQEEMRVRMAFLAKQDADVISDAKAA
Ga0209076_12320141	3300027643	Vadose Zone Soil	LYDVEFVRLICRDINNAKEDPQKEQELISLLQAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD
Ga0209117_10833092	3300027645	Forest Soil	VYNVELVRLICQDVNNAKDDPQKEQELLSLLRAVIREDHEEMRVRMAFLAKQYADVISDAKAAD
Ga0209117_11109962	3300027645	Forest Soil	LYNVELVRLICRDIHNATDDPQKEQELLSLLRAVIREDQEEMRVRMAFLAKQDADVISDAKAAD
Ga0209736_10520252	3300027660	Forest Soil	VYDVELVRLICRDIDNAKDDPQKERELLSLLQAVIREDQEEVRLRMAFLAKKYAAVISDTNAAD
Ga0209118_10107414	3300027674	Forest Soil	VYNVELVRMICRDINNAKDNPQKEQELISLLQAVIREDQEEVRLRMAFLAKKYAAVISDAKAAD
Ga0208989_100681663	3300027738	Forest Soil	LYNVELVRLICRDIHNAKDDPQKEQELLSLLRAVIREDQEEMRARMAFLAKRYADVISDAKAAD
Ga0209488_103397753	3300027903	Vadose Zone Soil	CRDLNNAKDDAEKERELLSLLRAVIQENQEDARTRMEFLKKKYPQVISDAKAAD
Ga0209488_109751381	3300027903	Vadose Zone Soil	VYDVEFVRLICRHINNAKDDPQKEQELISLLKAVIREDQEETRIRMAFLGKKYAAVISDAKAAD
Ga0209526_107966701	3300028047	Forest Soil	VYDVELVRLICRDINNAKDDPQKERELLSLLQAVIREDQEEVRLRMAFLAKKYAAVISDTSAAD
Ga0137415_101619663	3300028536	Vadose Zone Soil	VYDVEFVRLICRDINNAKDDPQKEQELISLLRAVIREDQEETRIRMAFLAKKYAAVISDAKASDAKAAD
Ga0137415_113397541	3300028536	Vadose Zone Soil	VYNVELVQLICSDINNAKDDPQKEQELISLLQAVIKEDQEEVRVRMAFLAKKYAAVISDAKAAD
Ga0307482_12683192	3300030730	Hardwood Forest Soil	RLYNLELVQQICRDLNNAKDDPEKERELLSLLRAVIQDDQEDIQTRMEFLKKKYPQVISDAKAAD
Ga0075388_112689322	3300030848	Soil	VFNVELVRQICRDINNPKDDSEKEEELLSLLQAVIKENQEEIRIRMAFITRKYASVVRNAKAAD
Ga0073994_124228861	3300030991	Soil	VYDVELVRLICRDINNAKEDPQKERELLSLLQAVIREDQEEVRLRMAFLAKKYAAVISDTSAAD
Ga0170834_1001862072	3300031057	Forest Soil	VEGEDWQLYNPELVRQICRDLEDAKDDAEKERELLSLLRAVIQDDQEDIQTRMEFLKKKYPQVISDAKAAD
Ga0170824_1102519611	3300031231	Forest Soil	VYNVELVRLICRDINATDDPEKERELLSLLRAVIQDDQEDIRTRMEFLKKKYPQVISDAKAAD
Ga0170824_1227205752	3300031231	Forest Soil	VFNVELVRQICRDINNPKDDSEKEEELLSLLQAVIKENQEEIRIRMAFITQKYASVVRNAKAAD
Ga0170820_137894861	3300031446	Forest Soil	VYDVELVRLICLDINNAKDDPQKEQELISLLQAVIREDQEEMRIRMAFLAKKYAAVISDAKAAD
Ga0170818_1132985422	3300031474	Forest Soil	VRQICRDINNPKDDSEKEEELLSLLQAVIKENQEEIRIRMAFITQKYASVVRNAKAAD
Ga0307474_1000377012	3300031718	Hardwood Forest Soil	VYDVELVRLICRDIKNAKDDPQKEQELVSLLQAVIREDQEEMRVRMAFLAKKYAAVISEAKAAD
Ga0307477_1000027922	3300031753	Hardwood Forest Soil	LYNVELVRRICCDINNAKDDAQREQELLSLLRAVIREDQEEVRVRMAFLAKQYADVISDANAAD
Ga0307477_100618991	3300031753	Hardwood Forest Soil	VYDVELVRLICRDIKNAKDDPQKEQELVSLLVRMAFLAKKYAAVISEAKAAD
Ga0307477_107825931	3300031753	Hardwood Forest Soil	CRLYNLELVQQICRDLNNAKDDPEKERELLSLLRAVIQDDQEDIQTRMEFLKKKYPQVISDAKAAD
Ga0307475_101437092	3300031754	Hardwood Forest Soil	MGKCSYPGRGGMGVRVYDVELVCLICRDINNAKDDPRKEQELISLLQAVIREDQEEMRIRMAFLAKKYAAVISDAKAAD
Ga0307475_102057094	3300031754	Hardwood Forest Soil	VQQICRDLNNAKDDPEKERELLSLLRAVIQDDQEDIQTRMEFLKKQYPQVISDAKAAD
Ga0307478_107500792	3300031823	Hardwood Forest Soil	VELVRRICCDINNAKDDAQREQELLSLLRAVIREDQEEVRVRMAFLAKQYADVISDANAA
Ga0307479_100313092	3300031962	Hardwood Forest Soil	MAFVYDAELVRLICRDIDKAKDDPQKEQELLSLLQAVIREDQEEMRIRMAFLAKKYAAAISDANAAD
Ga0307479_105396132	3300031962	Hardwood Forest Soil	VYDVELVRLICRDINSAKDEPQKEQELLSFLQAVIQENQEDMRIRMAFLAKQYATVISDAKAAD
Ga0307479_109253382	3300031962	Hardwood Forest Soil	VYDVELVRRICRDINSAKDDPQKEQELLSFLQAVIQENQEDMRIRMAFLAERYAAVISDAKAAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075880

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences