Scaffold Ga0307479

Basic Information
Taxon OID	3300031962 Open in IMG/M
Scaffold ID	Ga0307479_10002022 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031962 Open in IMG/M

Scaffold ID

Ga0307479_10002022 Open in IMG/M

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18479
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (39.13%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18479

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (39.13%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F004152	Metagenome	450	Y
F009674	Metagenome / Metatranscriptome	314	Y
F027476	Metagenome / Metatranscriptome	194	N
F033736	Metagenome	176	N
F086921	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000202211	F009674	N/A	LSELVRDLVRQMLRLQWDDATIVLHLKSAKIRNAQKILDSVLHEAKKEAIARLYSGNSYARR
Ga0307479_1000202215	F027476	N/A	MVGWGFAFGRGIVVLLWSIVWAIVAGIIGALIIGGSLTSLISNPTSVASNPTGVVTGFLAASFLGIFLIIFIAVIGLYATIVKVAVDGALSQLEKSGQYNRSSYAAASIGSQPTMVAPAMRKFCANCGNALAGGTVKCSNCGASI
Ga0307479_1000202219	F033736	N/A	MRRWFTNQRLMEALVVLAVIVSGYAGYSLGHSGGYAAGYSAGYADGNPDYAKIQASVKSTEVNYFGYVQQVLSKLAVESQNRSVYSPTAGFDKLYSVFKATNGSSTMFGQNMTFCNPTAKGYFQATATNTGNASFTNLYQTICLYYTKLANDYTGPLTSFTLQNLSNDFTLLSIDLLKLDSLIQSFPQ
Ga0307479_1000202222	F004152	AGGA	VQFYNISNDRVNRLTQIVADDLENDEVSSLVEYMTATSTGEIAQHKKTVEVNGLTNKKIKFLLHKFLYTRHLPDYRVLDTGGNFEIIHLKPEKKQSEQHETLSPTMLPESIGLGGLPRWGKPSDMIEWEGKPPPTRTRNKKE
Ga0307479_100020223	F000186	N/A	MEQEIAIKLQEDGIPYQTQFEIPVTTADFYFQIEPRPLIIFVDGWVHLKTSQMTKDEETRILLRKKGYRTLELHYNSYSDKKRDQLYQEILDTLGIKE
Ga0307479_100020228	F086921	N/A	MHVMSRTSRLGLAGIGACVLSLVMTLGAAAGLYPHPAGSNINFDADILFAIVFFTGELIGLLGLGVLIYLGVYNRQRDKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307479_10002022

Overview

Ecosystem & Geography

Associated Families

Sequences