Basic Information | |
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Taxon OID | 3300031962 Open in IMG/M |
Scaffold ID | Ga0307479_10001678 Open in IMG/M |
Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20255 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (57.89%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000624 | Metagenome / Metatranscriptome | 977 | Y |
F000696 | Metagenome / Metatranscriptome | 931 | Y |
F000703 | Metagenome / Metatranscriptome | 928 | Y |
F000739 | Metagenome / Metatranscriptome | 913 | Y |
F000781 | Metagenome / Metatranscriptome | 895 | Y |
F002853 | Metagenome / Metatranscriptome | 526 | Y |
F011614 | Metagenome / Metatranscriptome | 289 | Y |
F070523 | Metagenome / Metatranscriptome | 123 | Y |
F073888 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307479_1000167816 | F000696 | AGGA | MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQPDTSLQVAITDATAPPNQLPTDLLVPLKIWERRNGSTDDFLEMVDLTRHGGLPSRVQDVTLNVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLIRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF |
Ga0307479_1000167817 | F070523 | N/A | MLLFPDERVAIHAKLGSILKGGDPAEILLVIILLLALRPPSRRKAPKKKRQPKLP |
Ga0307479_1000167818 | F000739 | N/A | MNRFELWLKGILAAAISGGAGGVLTGFAAVGIDPQHFNLQSGIGATLRIGAAAALINAVIGVAAYLQKSPLPSE |
Ga0307479_1000167819 | F011614 | N/A | EPKYPAVNRWHIERWLPPETYGSPRAWYAQTIERENGISIPALGPHPSRGEYEHCFTLEGPRGEFVQLTPTIAEHIARAIEWSRKFPRAKQRAGLYSREAHEDRSYENWAFDQLDDAVPAFHKQPFVTVV |
Ga0307479_100016782 | F073888 | GGA | MPARYWIHLAEFTLAFLLALAVYFSWRADRRDRSQLESELAATKQLLAAADARQHDRDAQLAQTLATLAAEKRTIVTPAQIIRELPSQIPLPSPIAPQSAPALPNSPTPQASAIIPAEDLKPLYDFTIDCKACQAKLATSQSDLTDERNKTTALTHERDDALRIARGGSVWRRITRAAKWFLIGAAAGAVAAKAAH |
Ga0307479_100016784 | F000624 | AGGA | MPIHWYGVLTAIFTASVQFVLFLRWLHRRMRNDEITRAFVRDIATNHLPHIYNALQKIAAEQGIALDETPMVRFVDLNGPRRTR |
Ga0307479_100016785 | F002853 | AGGAGG | MGRGAQSQTRQMTDQERANIDALNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGIDSNLLGRTLGIPAELLNVRNNASRTNGGGFFSALGSGLGSALGALPGAFF |
Ga0307479_100016786 | F000703 | N/A | MHIREYQESDLAALRAIHAAQGFDYHLPDLRNPLFVTKLVLADDAASSAVVVQHAAPLQQPPQGTQDPVECSSRDTEGTAPPSRIIGAALLRLTAEAYLLLDPRAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIASKFGKRIARLGWLRDDAWTPYCKKLTEGK |
Ga0307479_100016787 | F000781 | N/A | MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDISIADPSAARPGLFYFAESDTTPAFAAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPIAVAGGGGAGPAPLPSSGSGVFPNGVPRSGNGFGIHPGSRIARQTVS |
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