NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306926_10471589

Scaffold Ga0306926_10471589


Overview

Basic Information
Taxon OID3300031954 Open in IMG/M
Scaffold IDGa0306926_10471589 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1545
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044415Metagenome154Y
F056819Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0306926_104715891F056819GGAGGMQTLLVALILAAVVGAVFLIARRGYWGYSQRLSDKTGGSGQTAIATFFALFWGWADYTPKDWSSAPYKRAFSDSSTTIRMRHG
Ga0306926_104715893F044415N/AKKPALSCTITGTPHLAAYNEQMDRLNAIRLLQALVAAGANYAPMADAWIKKVALEIGLRDGKLYSALAYAGTQDWLVDNQKEGSTSLTSGGEAWASPLSTTKTKLGRRRTAHAR

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