Scaffold Ga0314855_103160

Overview

Basic Information

• Taxon OID: 3300031953
• Scaffold ID: Ga0314855_103160
• Source Dataset Name: Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 CB1W
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1288
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Hydrotalea → unclassified Hydrotalea → Hydrotalea sp. AMD (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035569	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314855_1031605	F035569	AGGA	MNKHEKLIEMMRITGKGKMACEICLQLCGYDMEKTLERMQRSYPSMEVKK