Scaffold Ga0315294_10359000

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10359000
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1379
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032636	Metagenome	179	Y
F043389	Metagenome / Metatranscriptome	156	N
F091626	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_103590001	F091626	GGAG	MAFNLADYEDVATLNKWFISNFPFGRSDISVISHDAVNGYILIQATLWRDSKDTSPAVSNVAFGA
Ga0315294_103590003	F043389	GGAG	MIETTTPWIWLYCMLGIIIGYGIVTKIIDQAFDRGYWSGRSAGWRAANEHYEKVRKLKSQSVFDYDKQN
Ga0315294_103590005	F032636	N/A	QLIKMGHLPTTEGLMGLETDYKHRTIDDHIDDLEDIGVI