Scaffold Ga0315294_10069320

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10069320
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3717
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037113	Metagenome / Metatranscriptome	168	Y
F093236	Metagenome	106	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_1006932012	F093236	GGAGG	VKTEYLRLVTYEPSVTMSNRESVPSPYGPVRAGLTTSQITPDQRLSELLSSLESVVENLNYKSFTLYDMLCTAIEEISAVLSATLTDEGGTDV
Ga0315294_1006932014	F100350	GAGG	MIYAFKCECGSTREIEQSIHAEIITPMCTDCHQSMSRSWSSPAVTFKGPGFYSNGG
Ga0315294_100693207	F037113	GAGG	MNKWTVWAGGSEVNWQHYTHKIDAERVAEFWREVKGYDDVLVERVA