Scaffold Ga0315904_10246753

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10246753
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1713
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_102467531	F059096	N/A	VQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAISDFAGREKLDVQLP
Ga0315904_102467532	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVSNCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKINQSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVTAIADQLGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRVGSDGHWVFQK
Ga0315904_102467533	F000545	N/A	MRSDAHPFNCSNCKLVTPHIELTKYESIDIAEAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIIRCEQCGGWKMKSGKCRVCRLAAGFEKLSEKYWTGNSTMERPYDASV
Ga0315904_102467534	F002241	AGGAG	MGREGQMSKPHSIGYIKQLMEWGFDKEFIARDCGINLASLETRLRRSAERERNRNGNQGTESGTSSS