NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10116385

Scaffold Ga0315904_10116385


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10116385 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2776
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080002Metagenome115N
F085646Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_101163852F080002N/AVITTYTSTAYSANSTAELRRPCLWEDEFKIDNLPTWIYTDNQPPKDTRDCEAKISSLEYTIRDIELQIEIRELELKTGNSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKNERRELDSPGKLDKLIELLIEDPSDFETKAKALLQ
Ga0315904_101163853F085646N/AMDITREIKDIRDALNSIEASLQLLVAQKGGKITSAFVSKKIVSQRLNVPAVTIDKLIHQGIASKGESGLVEGRHFCKTDPTERNSSKFLYDIHAITQAAWSNFTYV

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