NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1039462

Scaffold Ga0308417_1039462


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1039462 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2069
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F056643Metagenome / Metatranscriptome137N
F067304Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10394621F056643N/ADAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWLARGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLIRAPSV
Ga0308417_10394622F005302AGGAGGMSHSGVIAGLYAGNYAVEISTDGTTWTAVSNATVKIDDVELNRPSGEAYVGGSSDYATITVGKREPIEITLTFLYNEASNSAANTVYGLFESATPRLAVRWSPRGLVSDARAYATSNDGSTAGLGVITNVTLSALDPSDAEPYVLMATVRTPTLWQYTLGSNPTNLNPAS
Ga0308417_10394623F004791AGGAGGMTKPAEIYDIDTIRVDRNALLIRDAATLLNRELTPETIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDSAIRARVEGMRPNVATITLGEYHQFLDASERRIAFPEVAVTMLTKAYGEDILNEPYAAAALLLRKIFDAVGDEGNE
Ga0308417_10394624F067304N/AMRCDQRLVSPLRAQRRKMLRDAPERLTIKRVRRAVVDVPTQHQFGICGGQRREVEQT
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