Scaffold Ga0308417_1010856

Overview

Basic Information

• Taxon OID: 3300031950
• Scaffold ID: Ga0308417_1010856
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5058
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F081390	Metagenome / Metatranscriptome	114	Y
F105262	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308417_10108561	F105262	AGGAGG	MLVQETIQPLLRFFNANVTAPADTSVISIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKAIATLTSNSSYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPARDVPATLPTGWTRVL
Ga0308417_10108563	F002970	GGAG	MSYSSVTDIIELLAGLAVQYNSAVVPVRRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVARLRFAWLARGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLVRAPSV
Ga0308417_10108564	F005302	AGGAGG	MSHSGVLAGLYAGNFAVEISTDTTTWTAVSNATVKIDDVELSRPSGEAFVGGSSDYATITVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVSQARAYATSNDGGANTGLGVITNVTLSALDPSDPEPYVAMVTVRTPSLRQYTLGNNPTNLS
Ga0308417_10108565	F004791	AGGAGG	MSTPANIYDVDAIYVDRNALLIRDAATLLNRELTPETIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDAAIRARVEGLRPNVATITLGEYHQFLDASERRIAFPEVAATLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNG
Ga0308417_10108566	F081390	N/A	MRRDQRLMPPFRAQRREMLRHALQRQTIKRVGRAVIDIST