NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1001115

Scaffold Ga0308417_1001115


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1001115 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18708
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F028964Metagenome / Metatranscriptome190N
F038570Metagenome / Metatranscriptome165N
F042758Metagenome / Metatranscriptome157N
F059420Metagenome134Y
F061432Metagenome / Metatranscriptome131N
F061873Metagenome / Metatranscriptome131Y
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100111510F061432GGGGGMTSERIDILERGDNFAPATARVTWGGSVNVPAGGNVTLAIAGLSEVSGNIFEYVPAAQALRIKQAGVIGFLVNVACNATGVGNLSVLLRQASPLHEWGLAVQPYYLHAGFAFATGGTRLVNVPSGGANYQIYVVNTGGSGSFTLQTVDVRLVYLGRR
Ga0308417_100111511F028964AGGMIGAEVALALTSLRQPGTRTGAIALGGSFDRRAMDVAECELEIHALAPSYDLSAYGNVLLVMLPDRREAYFITAIERRNTYYVVRGETFVRYLRDYYPERYAGTSDAQWNGDAAEGVRRSLRPLESVPVHSSGVNFRDYWIIVPDNVPPSVTISTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAVKDAAGNYGVEPSIALVFSHGLPRNGLFRPRWGGSIKYEAWVYDRSQPTAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSSAAQAALMRWRPVEAGSGQAYSLETPRLGDQVFLVAGDSQRCAGIAHVVSERYTVTGGQVSSAEVGVVQI
Ga0308417_100111512F059420AGGAGGMEIELFRGTSTLTTLHYRNVAGQYAWVLRDFQGDLMDEVEVLTRDALGGRTLLVGQQGRARRIVIVLDVQGTSMVNLHAAIRELETHTRWRRGGTPLELRVRMEAADPWDTIEVVLEQMSAQFEDDQYRATVTLRLACRSVYWREGIGVFPSSNSTLTGNAFVVNLSTMTFTPITGIAETVLNIDYRETSNEWIIFTTTQVWRAPAAGGAAALVGSVTGSTNLRGCVAHDGSILAVAQGVNQLVRFTYPSSSPTVLGAFNGVPFRVRRSGNSYVSVGEFSQYQTTSGLAGYVLTNVTGAITSTFSPFPTSAIFPGGGRIRDVLLKDNIGVAIAHRAPSPSQSWVVAWSGQVSPYYVAEGASTWAPFEIDQASEIDDVTICTESWIHAGRTFNTLCRLKNLSGIVPYAYPTASIGGVQDGCAIERFAFATSEPRKAFRLGDDGTAMPLFTANNNSIAIRRVDNLMCIGYVAPATVWTPLTVDVSAIANTGATAEIVPRLGGLAVDVFSCYSKVDTEILGEVIDPQTQAVNYEPKYYSGGTVTPLPGTRYERMFRGSANEWINRYWFAVGGNVPQNNVTLNRYKHDWR
Ga0308417_100111514F093039GAGVTLLLHLAETWGVPPWVLERELSLFWAEAVCDYEREKARQAKRAMRKYGGR
Ga0308417_100111515F025421N/AMIDLSKVRRIDRSAPGSFMEYARLQAIIAEGNLTAIAHALESYGVDLQGLSFNELADVVKHIAGEPTPLAATSATA
Ga0308417_100111516F038570AGGAGMPATHLRRIQLGQQTTFSTPVAATSILRGVTDGSITLNHNDAVVEELGRSVSDLVVVSQRHAEGEVELQCTYEDILYGLFGLFGPVSQIGGSRTFNAPLTSYAAPQIYTVEYGATGAEYRVVGGIVSEWTLSYEANAGVMESWSLIGRSVQANALTGSLPTRNVTPVLSRHASWFVDPIGTAHGTTAVPGTVIEAELTINTNRHLKMFEGAQPLDWGEGRWEAQLTLTAEFNATAKAWVDALLTNRVARNIRAEFIETASTRELRIDFVGLIAEPVELFGDRDGNMTVELTFNALVAGPLNNWLQIRTINGVATLP
Ga0308417_100111518F022604GAGGMLSAVNAVHAVVATVTGIVAAYTTVPMSANTPALPLALVTPISENRRQHAHALVRIETLVRVRVVHSPIAQGITSSQQSALYTLADDVMTAITDDITLGGQVDHVASVDAEEPSIYTLAGTDYLSISIAVRVVEKI
Ga0308417_10011152F061873AGGAGGMNEKMNETMTLDDLIRRGVEIREKRIAEERARIAAFHEKLASESAEREREIRALLPSPLNELSKIDVGVRHAHIYITEPFPGKGKVVIYASKKDEQWRFLEHEAYNPDGYYLKFQTLEEAVAYAAGALDE
Ga0308417_100111520F042758AGGAGMKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCVVGAATTPPSFKIQSSANNSTFADLTGKSITSVAANSEGIINVRDEDLPDGHRWIRAVVNGTATVAVVFIGTSARDNPPAKLSTTTIVD
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