Metagenome / Metatranscriptome Family F093039

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093039
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	49 residues
Representative Sequence	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHGGR
Number of Associated Samples	39
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.33 %
% of genes near scaffold ends (potentially truncated)	33.02 %
% of genes from short scaffolds (< 2000 bps)	76.42 %
Associated GOLD sequencing projects	35
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.811 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat (73.585 % of family members)
Environment Ontology (ENVO)	Unclassified (98.113 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (73.585 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 80.39% β-sheet: 0.00% Coil/Unstructured: 19.61%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF10145	PhageMin_Tail	38.68
PF05135	Phage_connect_1	2.83
PF05065	Phage_capsid	1.89
PF04233	Phage_Mu_F	0.94
PF03237	Terminase_6N	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	1.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
All Organisms	root	All Organisms	30.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
cellular organisms	root	All Organisms → cellular organisms	21.70 %
Viruses	superkingdom	All Organisms → Viruses	8.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.49 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.49 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	4.72 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.49 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	3.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.49 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	3.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002493\|JGI24185J35167_1019323	Not Available	1929	Open in IMG/M
3300002493\|JGI24185J35167_1027350	Not Available	1441	Open in IMG/M
3300002493\|JGI24185J35167_1032796	Not Available	1231	Open in IMG/M
3300002493\|JGI24185J35167_1051128	Not Available	838	Open in IMG/M
3300002920\|Pfga_1088300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3209	Open in IMG/M
3300003688\|Ga0061020_1078148	Not Available	708	Open in IMG/M
3300005452\|Ga0068706_1016300	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1756	Open in IMG/M
3300005452\|Ga0068706_1016312	All Organisms → Viruses → Predicted Viral	1755	Open in IMG/M
3300005452\|Ga0068706_1048592	Not Available	787	Open in IMG/M
3300005452\|Ga0068706_1062157	Not Available	667	Open in IMG/M
3300005452\|Ga0068706_1072016	Not Available	609	Open in IMG/M
3300005452\|Ga0068706_1091559	Not Available	531	Open in IMG/M
3300005453\|Ga0068705_10118487	Not Available	685	Open in IMG/M
3300010181\|Ga0124926_1051495	Not Available	578	Open in IMG/M
3300010272\|Ga0124912_1068304	Not Available	678	Open in IMG/M
3300026237\|Ga0209750_1016454	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1663	Open in IMG/M
3300026237\|Ga0209750_1039946	Not Available	894	Open in IMG/M
3300026280\|Ga0209017_10079124	Not Available	656	Open in IMG/M
3300026509\|Ga0209809_1007617	All Organisms → cellular organisms → Bacteria	5526	Open in IMG/M
3300026509\|Ga0209809_1016857	Not Available	3036	Open in IMG/M
3300026509\|Ga0209809_1021855	Not Available	2490	Open in IMG/M
3300026509\|Ga0209809_1022437	All Organisms → Viruses → Predicted Viral	2441	Open in IMG/M
3300026509\|Ga0209809_1031473	Not Available	1875	Open in IMG/M
3300026509\|Ga0209809_1033487	Not Available	1784	Open in IMG/M
3300026509\|Ga0209809_1074843	Not Available	933	Open in IMG/M
3300026509\|Ga0209809_1123946	Not Available	618	Open in IMG/M
3300026509\|Ga0209809_1153423	Not Available	513	Open in IMG/M
3300027279\|Ga0209691_1025092	Not Available	1374	Open in IMG/M
3300031245\|Ga0308395_1006964	All Organisms → cellular organisms → Bacteria	4926	Open in IMG/M
3300031245\|Ga0308395_1087259	Not Available	732	Open in IMG/M
3300031508\|Ga0308394_1042969	Not Available	1100	Open in IMG/M
3300031509\|Ga0308399_1000916	Not Available	10131	Open in IMG/M
3300031509\|Ga0308399_1085411	Not Available	642	Open in IMG/M
3300031512\|Ga0308397_1052478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	988	Open in IMG/M
3300031512\|Ga0308397_1071705	Not Available	789	Open in IMG/M
3300031512\|Ga0308397_1089249	Not Available	675	Open in IMG/M
3300031513\|Ga0308412_1002592	All Organisms → cellular organisms → Bacteria	9734	Open in IMG/M
3300031513\|Ga0308412_1034613	All Organisms → Viruses → Predicted Viral	1896	Open in IMG/M
3300031513\|Ga0308412_1050319	Not Available	1442	Open in IMG/M
3300031513\|Ga0308412_1059245	Not Available	1280	Open in IMG/M
3300031513\|Ga0308412_1065374	Not Available	1189	Open in IMG/M
3300031513\|Ga0308412_1070865	Not Available	1120	Open in IMG/M
3300031513\|Ga0308412_1075782	Not Available	1065	Open in IMG/M
3300031513\|Ga0308412_1099486	Not Available	875	Open in IMG/M
3300031513\|Ga0308412_1102428	Not Available	857	Open in IMG/M
3300031513\|Ga0308412_1204638	Not Available	532	Open in IMG/M
3300031513\|Ga0308412_1210129	Not Available	523	Open in IMG/M
3300031514\|Ga0308390_1052619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1033	Open in IMG/M
3300031514\|Ga0308390_1054932	Not Available	997	Open in IMG/M
3300031514\|Ga0308390_1079459	Not Available	744	Open in IMG/M
3300031515\|Ga0308396_1004598	Not Available	5316	Open in IMG/M
3300031515\|Ga0308396_1019088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1885	Open in IMG/M
3300031515\|Ga0308396_1041829	Not Available	1064	Open in IMG/M
3300031516\|Ga0308398_1034721	All Organisms → Viruses → Predicted Viral	1349	Open in IMG/M
3300031516\|Ga0308398_1121466	Not Available	553	Open in IMG/M
3300031517\|Ga0308392_1054423	Not Available	910	Open in IMG/M
3300031518\|Ga0308389_1006652	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5723	Open in IMG/M
3300031518\|Ga0308389_1096676	Not Available	672	Open in IMG/M
3300031568\|Ga0308393_1132707	Not Available	515	Open in IMG/M
3300031568\|Ga0308393_1138352	Not Available	501	Open in IMG/M
3300031767\|Ga0308401_1008160	All Organisms → cellular organisms → Bacteria	2587	Open in IMG/M
3300031776\|Ga0308415_1000525	All Organisms → cellular organisms → Bacteria	16837	Open in IMG/M
3300031776\|Ga0308415_1000683	All Organisms → cellular organisms → Bacteria	14962	Open in IMG/M
3300031776\|Ga0308415_1005360	All Organisms → cellular organisms → Bacteria	4704	Open in IMG/M
3300031783\|Ga0308418_1080756	Not Available	733	Open in IMG/M
3300031783\|Ga0308418_1138179	Not Available	512	Open in IMG/M
3300031812\|Ga0308411_10000680	All Organisms → cellular organisms → Bacteria	22768	Open in IMG/M
3300031812\|Ga0308411_10043210	Not Available	2133	Open in IMG/M
3300031812\|Ga0308411_10049558	Not Available	1920	Open in IMG/M
3300031812\|Ga0308411_10106135	Not Available	1066	Open in IMG/M
3300031812\|Ga0308411_10148409	Not Available	834	Open in IMG/M
3300031812\|Ga0308411_10171197	Not Available	753	Open in IMG/M
3300031812\|Ga0308411_10178246	Not Available	732	Open in IMG/M
3300031812\|Ga0308411_10218767	Not Available	636	Open in IMG/M
3300031830\|Ga0308409_1046975	All Organisms → Viruses → Predicted Viral	1084	Open in IMG/M
3300031875\|Ga0308405_1040918	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1336	Open in IMG/M
3300031878\|Ga0308404_1002608	Not Available	4947	Open in IMG/M
3300031878\|Ga0308404_1027741	Not Available	1217	Open in IMG/M
3300031878\|Ga0308404_1041225	Not Available	955	Open in IMG/M
3300031878\|Ga0308404_1054217	Not Available	809	Open in IMG/M
3300031878\|Ga0308404_1086511	Not Available	614	Open in IMG/M
3300031950\|Ga0308417_1001115	All Organisms → cellular organisms → Bacteria	18708	Open in IMG/M
3300031950\|Ga0308417_1035464	All Organisms → Viruses → Predicted Viral	2238	Open in IMG/M
3300031950\|Ga0308417_1084255	All Organisms → Viruses → Predicted Viral	1173	Open in IMG/M
3300031950\|Ga0308417_1099954	Not Available	1034	Open in IMG/M
3300031950\|Ga0308417_1146819	Not Available	780	Open in IMG/M
3300031950\|Ga0308417_1170531	Not Available	699	Open in IMG/M
3300031950\|Ga0308417_1239770	Not Available	550	Open in IMG/M
3300031958\|Ga0308410_1024949	All Organisms → cellular organisms → Bacteria	2332	Open in IMG/M
3300031958\|Ga0308410_1059051	Not Available	1203	Open in IMG/M
3300031958\|Ga0308410_1123314	Not Available	700	Open in IMG/M
3300031980\|Ga0308403_1002153	All Organisms → cellular organisms → Bacteria	5797	Open in IMG/M
3300031980\|Ga0308403_1027916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1266	Open in IMG/M
3300031980\|Ga0308403_1047913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	895	Open in IMG/M
3300031980\|Ga0308403_1058325	Not Available	788	Open in IMG/M
3300031980\|Ga0308403_1086111	Not Available	618	Open in IMG/M
3300032033\|Ga0308402_1037928	Not Available	988	Open in IMG/M
3300032034\|Ga0308407_1072878	Not Available	734	Open in IMG/M
3300032045\|Ga0308400_1001093	Not Available	9041	Open in IMG/M
3300032045\|Ga0308400_1050683	Not Available	925	Open in IMG/M
3300032045\|Ga0308400_1081888	Not Available	672	Open in IMG/M
3300032058\|Ga0308419_1053306	All Organisms → Viruses → Predicted Viral	1391	Open in IMG/M
3300033886\|Ga0308413_014084	All Organisms → cellular organisms → Bacteria	3003	Open in IMG/M
3300034649\|Ga0372972_003208	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3527	Open in IMG/M
3300034650\|Ga0372973_021392	All Organisms → Viruses → Predicted Viral	1075	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Thermal Springs	Environmental → Aquatic → Thermal Springs	100.00%

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	99.06%
Unclassified	Environmental → Aquatic → Thermal Springs → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	99.06%
Unclassified	Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Hot Spring Phototrophic Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat	73.58%
Anoxygenic And Chlorotrophic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic	16.04%
Anoxygenic And Chlorotrophic Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat	9.43%
Hot Springs	Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002493	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012	Environmental	Open in IMG/M
3300002920	Hot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA-MHS Pond Facies_Gas lift	Environmental	Open in IMG/M
3300003688	Coassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012	Environmental	Open in IMG/M
3300005452	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG	Environmental	Open in IMG/M
3300005453	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG	Environmental	Open in IMG/M
3300010181	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300_B MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010272	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300026237	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)	Environmental	Open in IMG/M
3300026280	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)	Environmental	Open in IMG/M
3300026509	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)	Environmental	Open in IMG/M
3300027279	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)	Environmental	Open in IMG/M
3300031245	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4	Environmental	Open in IMG/M
3300031508	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2	Environmental	Open in IMG/M
3300031509	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60	Environmental	Open in IMG/M
3300031512	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8	Environmental	Open in IMG/M
3300031513	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer	Environmental	Open in IMG/M
3300031514	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149	Environmental	Open in IMG/M
3300031515	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2	Environmental	Open in IMG/M
3300031516	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9	Environmental	Open in IMG/M
3300031517	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2	Environmental	Open in IMG/M
3300031518	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_148	Environmental	Open in IMG/M
3300031568	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2	Environmental	Open in IMG/M
3300031767	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1	Environmental	Open in IMG/M
3300031776	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55	Environmental	Open in IMG/M
3300031783	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd	Environmental	Open in IMG/M
3300031812	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer	Environmental	Open in IMG/M
3300031830	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4	Environmental	Open in IMG/M
3300031875	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13	Environmental	Open in IMG/M
3300031878	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4	Environmental	Open in IMG/M
3300031950	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65	Environmental	Open in IMG/M
3300031958	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore	Environmental	Open in IMG/M
3300031980	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3	Environmental	Open in IMG/M
3300032033	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2	Environmental	Open in IMG/M
3300032034	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2	Environmental	Open in IMG/M
3300032045	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65	Environmental	Open in IMG/M
3300032058	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50	Environmental	Open in IMG/M
3300033886	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd	Environmental	Open in IMG/M
3300034649	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1400_MSt11 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034650	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1600_MSt12 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24185J35167_10193233	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	LLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHGGR*
JGI24185J35167_10273502	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRRYGGR*
JGI24185J35167_10327963	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	VILLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARRMKREMRKHGGR*
JGI24185J35167_10511281	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEHEREKVRRMKREMRXYGGR*
Pfga_10883007	3300002920	Hot Springs	VILLLHLAETWGVPPWVLERELSLFWAEAVCEYEREKARQAKRAMRKYGGR*
Ga0061020_10781482	3300003688	Anoxygenic And Chlorotrophic Microbial Mat	LLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARRMKREMRKHGGR*
Ga0068706_10163002	3300005452	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHG*
Ga0068706_10163122	3300005452	Anoxygenic And Chlorotrophic	VILLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARQVKRAMRKHGGR*
Ga0068706_10485923	3300005452	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMGKHGGR*
Ga0068706_10621571	3300005452	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQ
Ga0068706_10720161	3300005452	Anoxygenic And Chlorotrophic	VTLLFHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRIKREMRRYGGR*
Ga0068706_10915591	3300005452	Anoxygenic And Chlorotrophic	DRVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARRMKREMRRYGGR*
Ga0068705_101184873	3300005453	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEVVCDYEREKARQVKRAMRKHGGR*
Ga0124926_10514952	3300010181	Anoxygenic And Chlorotrophic Microbial Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEHEREKVRRMKREMRRYGGR*
Ga0124912_10683043	3300010272	Anoxygenic And Chlorotrophic Microbial Mat	LLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARQVKRAMRKHG*
Ga0209750_10164542	3300026237	Anoxygenic And Chlorotrophic Microbial Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRKHGGR
Ga0209750_10399463	3300026237	Anoxygenic And Chlorotrophic Microbial Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEHEREKVRRMKREMRRYGRR
Ga0209017_100791242	3300026280	Anoxygenic And Chlorotrophic Microbial Mat	VILLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0209809_10076176	3300026509	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHG
Ga0209809_10168573	3300026509	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMGKHGGR
Ga0209809_10218552	3300026509	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0209809_10224373	3300026509	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEHEREKVRRMKREMRRYGGR
Ga0209809_10314732	3300026509	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRRHGGR
Ga0209809_10334872	3300026509	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRRYGGR
Ga0209809_10748432	3300026509	Anoxygenic And Chlorotrophic	LLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARRMKREMRKHGGR
Ga0209809_11239461	3300026509	Anoxygenic And Chlorotrophic	SPFSGHERDRVTLLLHLAETWGVPPWVLEQELSLYWAEAACEYEREKARQVRRAMRKHG
Ga0209809_11534232	3300026509	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEVVCDYEREKARQVKRAMRKHGGR
Ga0209691_10250924	3300027279	Anoxygenic And Chlorotrophic	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKVRRMKREMRR
Ga0308395_10069648	3300031245	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKVRRMKREMRKHGGR
Ga0308395_10872592	3300031245	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKARQVKRAMRKHGGR
Ga0308394_10429693	3300031508	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKVRRMKREMRKHGGR
Ga0308399_10009163	3300031509	Hot Spring Phototrophic Mat	VTLLLYLAETWGVAPWVLERELSLFWAEAACEYEREKVRRVKREMRRYG
Ga0308399_10854112	3300031509	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLERELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308397_10524782	3300031512	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308397_10717051	3300031512	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKARQVKRAMRKHG
Ga0308397_10892491	3300031512	Hot Spring Phototrophic Mat	VTLLLHLAEKWGVPPWVLERELSLFWAEAACEHEREKVRRMK
Ga0308412_10025927	3300031513	Hot Spring Phototrophic Mat	VTLLLHLAETWGVAPWVLERELSLFWAEAACEYEREKVRRMKREIRRYGGR
Ga0308412_10346133	3300031513	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLERELSLFWAEAVCEYEREKARQVKRAMKKHGGR
Ga0308412_10503192	3300031513	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQARRAMRKHG
Ga0308412_10592453	3300031513	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMR
Ga0308412_10653742	3300031513	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLERELSLFWAEATCEYEREKVRRMKREMRKYGGR
Ga0308412_10708653	3300031513	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLERELSLFWAESVCEYEREKARQVKRAMRKHGGR
Ga0308412_10757822	3300031513	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEHEREKARQLKRAMRKHGGR
Ga0308412_10994863	3300031513	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMKKHGGR
Ga0308412_11024282	3300031513	Hot Spring Phototrophic Mat	LLLHIAETWGVPPWVLEQELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308412_12046381	3300031513	Hot Spring Phototrophic Mat	AETWGVPPWVLERELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308412_12101291	3300031513	Hot Spring Phototrophic Mat	VILLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKARQVKR
Ga0308390_10526192	3300031514	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREIRRYGGR
Ga0308390_10549321	3300031514	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKVRRMKRE
Ga0308390_10794592	3300031514	Hot Spring Phototrophic Mat	RGHERDRLTLLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKVRRMKREMRKHGGR
Ga0308396_10045983	3300031515	Hot Spring Phototrophic Mat	VILLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARRMKREMRKHGGR
Ga0308396_10190882	3300031515	Hot Spring Phototrophic Mat	VTLLLYLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRRHG
Ga0308396_10418293	3300031515	Hot Spring Phototrophic Mat	MLLLHLAEAWGVPPWVLEQELSLYWAEAACEYEREKARQVRRAMRKHG
Ga0308398_10347213	3300031516	Hot Spring Phototrophic Mat	VILLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARQVKRAMRK
Ga0308398_11214661	3300031516	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKVRRMKREMR
Ga0308392_10544231	3300031517	Hot Spring Phototrophic Mat	RVTLLLHLAETWGVAPWVLERELSLFWAEAACEHEREKVRRMKREMRRYGGR
Ga0308389_10066521	3300031518	Hot Spring Phototrophic Mat	LAETLGVPPWVLEQELSLYWAEAACEYEREKARQVRRAMRKHG
Ga0308389_10966761	3300031518	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARRMKREM
Ga0308393_11327072	3300031568	Hot Spring Phototrophic Mat	VILLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKARRMKREMRKHGGR
Ga0308393_11383521	3300031568	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEHEREKARQVKRAMRKHGGR
Ga0308401_10081602	3300031767	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERDLSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308415_100052515	3300031776	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREQVRRMKREIRRYGGR
Ga0308415_100068316	3300031776	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRTMRKHGGR
Ga0308415_10053608	3300031776	Hot Spring Phototrophic Mat	VTLLLYLAETWGVAPWVLERELSLFWAEAACEYEREKVRRMKREIRRYGRR
Ga0308418_10807562	3300031783	Hot Spring Phototrophic Mat	LHLAETWGVPPWVLEQELSLFWAEAACEYEREKARRMKREMRKHGGR
Ga0308418_11381792	3300031783	Hot Spring Phototrophic Mat	HERDRVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRKHGGR
Ga0308411_100006805	3300031812	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLEQELSLFWAEAACEWEREKARQMKRAMRKHGGR
Ga0308411_100432102	3300031812	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERDLSLFWAEAACEYEREKVRRMKREMRRYGGR
Ga0308411_100495583	3300031812	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLEKELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308411_101061352	3300031812	Hot Spring Phototrophic Mat	VILLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKARQVKRAMRKHGGR
Ga0308411_101484091	3300031812	Hot Spring Phototrophic Mat	TLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQAKRAMRKHGGR
Ga0308411_101711972	3300031812	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWLLERELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308411_101782462	3300031812	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308411_102187672	3300031812	Hot Spring Phototrophic Mat	VTLLLHLAETWGVAPWVLERELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308409_10469751	3300031830	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRRY
Ga0308405_10409181	3300031875	Hot Spring Phototrophic Mat	RDRVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARRMKREMRRYGGR
Ga0308404_10026084	3300031878	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEHEREKARQAKRAMRKHGGR
Ga0308404_10277413	3300031878	Hot Spring Phototrophic Mat	LLLHLAETWSVPPWVLERELSLFWAEAACEYEREKARQVKRAMRK
Ga0308404_10412251	3300031878	Hot Spring Phototrophic Mat	LAETWGVAPWVLERELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308404_10542173	3300031878	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERDLSLFWAEAACEYEREKAR
Ga0308404_10865111	3300031878	Hot Spring Phototrophic Mat	PFRGHERDRVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHG
Ga0308417_100111514	3300031950	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCDYEREKARQAKRAMRKYGGR
Ga0308417_10354644	3300031950	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKARRVKREMRKHGGR
Ga0308417_10842553	3300031950	Hot Spring Phototrophic Mat	VTLLLHLAETWGIPPWVLERELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308417_10999541	3300031950	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEHEREK
Ga0308417_11468193	3300031950	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLEQELSLFWAEAVCEHEREKARQVKRAMRKHGGR
Ga0308417_11705312	3300031950	Hot Spring Phototrophic Mat	LLLHLAETWGVPPWVLERELSLFWAEAVCEHEREKARQVKRAMRKHGGR
Ga0308417_12397702	3300031950	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARKVKRAMRKHGGR
Ga0308410_10249491	3300031958	Hot Spring Phototrophic Mat	VTLLLHLAETWGVAPWVLERELSLFWAEAACEYEREKVRRMKR
Ga0308410_10590513	3300031958	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCDYEREKARQVKRAMRK
Ga0308410_11233141	3300031958	Hot Spring Phototrophic Mat	SGYERDRVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308403_10021537	3300031980	Hot Spring Phototrophic Mat	VNLLLHLAETWGVPPWALERELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308403_10279163	3300031980	Hot Spring Phototrophic Mat	VTLLLYLAETWGVAPWVLERELSLFWAEAACEYEREKVRRVKREIRRYGGR
Ga0308403_10479132	3300031980	Hot Spring Phototrophic Mat	HERDRVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308403_10583253	3300031980	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYERE
Ga0308403_10861112	3300031980	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAVCEYEREKVRQVKREMRRYGGR
Ga0308402_10379282	3300032033	Hot Spring Phototrophic Mat	VTLLLHFAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHGGR
Ga0308407_10641672	3300032034	Hot Spring Phototrophic Mat	WGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHG
Ga0308407_10728781	3300032034	Hot Spring Phototrophic Mat	WGVPPWVLERELSLFWAEVVCDYEREKARQVKRAMRKHGGR
Ga0308400_10010937	3300032045	Hot Spring Phototrophic Mat	VTLLLHLAETWGMPPWELERELSLFWAEAACEYEREKVRRMKREIRRYGGR
Ga0308400_10506832	3300032045	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWLLERELSLFWAEAVCEYEREKARQVKRAMRKHGGR
Ga0308400_10818882	3300032045	Hot Spring Phototrophic Mat	LLLHLAETWGVAPWVLERELSLFWAEAACEYEREKVRRMKREIRRYGGR
Ga0308419_10533064	3300032058	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKVRRMKREM
Ga0308413_014084_382_537	3300033886	Hot Spring Phototrophic Mat	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQMKRAMRKHGGR
Ga0372972_003208_2_166	3300034649	Hot Spring Phototrophic Mat	RDRVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMGKHGGR
Ga0372973_021392_2_175	3300034650	Hot Spring Phototrophic Mat	EHERDRVILLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARRMKREMRKHGGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093039

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences