Scaffold Ga0306925_10058359

Overview

Basic Information

• Taxon OID: 3300031890
• Scaffold ID: Ga0306925_10058359
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4038
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001907	Metagenome / Metatranscriptome	619	Y
F028012	Metagenome / Metatranscriptome	193	N
F096427	Metagenome	104	Y
F098426	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306925_1005835910	F096427	GAG	MRVLAGTIKERATKAIMLRIANDYDRLARHADARTGNRTNK
Ga0306925_1005835912	F028012	GGAG	MAANHIFGLGNPVPTATATLVAAILVISTMPVQGQQPSADQLKAYAQNTVKIISGDKQRIEAFCELNDLTNQLDQAVDEKDTRKAEEVSQKGEELLRELGPEFAALADGINSVNLSSQDAREIGSIIGN
Ga0306925_100583593	F001907	AGG	MNTERLARHHEAREALVLSVAGVTAIMLIANLLLLILY
Ga0306925_100583596	F098426	N/A	MTLTNLPPGSGLFVLLALFLTVATIWLLLRAIETRPNEIDLRLFLVSIVVIIPFVMVIYFGLATIICNEIVAGRPTLPVELSLRKIVPATVTYIGLSAWVWLRWRKVGYLR