Metagenome Family F096427

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096427
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	42 residues
Representative Sequence	MRTLAETMNERATKAIMLRIANDYDRLARRAEIRTGNRTTNE
Number of Associated Samples	42
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	48.08 %
% of genes near scaffold ends (potentially truncated)	53.85 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	37
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.654 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.692 % of family members)
Environment Ontology (ENVO)	Unclassified (49.038 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (84.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.14% β-sheet: 0.00% Coil/Unstructured: 52.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04392	ABC_sub_bind	8.65
PF00036	EF-hand_1	5.77
PF00248	Aldo_ket_red	1.92
PF08042	PqqA	1.92
PF00583	Acetyltransf_1	1.92
PF13545	HTH_Crp_2	0.96
PF00027	cNMP_binding	0.96
PF04226	Transgly_assoc	0.96
PF03631	Virul_fac_BrkB	0.96
PF07045	DUF1330	0.96
PF13202	EF-hand_5	0.96
PF00701	DHDPS	0.96
PF10686	YAcAr	0.96
PF13924	Lipocalin_5	0.96
PF13185	GAF_2	0.96
PF07681	DoxX	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	8.65
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.92
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.96
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.96
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.96
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.96
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
All Organisms	root	All Organisms	41.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
cellular organisms	root	All Organisms → cellular organisms	41.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.50 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.69 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.96 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.96 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.69 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	0.96 %
Aquabacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium	0.96 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.96 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.96 %
Aquabacterium olei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium olei	0.96 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.65 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.96 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.96 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.96 %
Aquabacterium olei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium olei	0.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100679124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1640	Open in IMG/M
3300005332\|Ga0066388_100856603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1493	Open in IMG/M
3300005332\|Ga0066388_100939640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1437	Open in IMG/M
3300005332\|Ga0066388_101510854	Not Available	1175	Open in IMG/M
3300005332\|Ga0066388_101794086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1090	Open in IMG/M
3300005332\|Ga0066388_103991866	Not Available	752	Open in IMG/M
3300005332\|Ga0066388_104353824	Not Available	721	Open in IMG/M
3300005332\|Ga0066388_105761320	Not Available	627	Open in IMG/M
3300005332\|Ga0066388_106141388	Not Available	606	Open in IMG/M
3300005332\|Ga0066388_108492648	Not Available	511	Open in IMG/M
3300005764\|Ga0066903_100119668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3654	Open in IMG/M
3300005764\|Ga0066903_100152009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3329	Open in IMG/M
3300005764\|Ga0066903_100194467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3021	Open in IMG/M
3300005764\|Ga0066903_101352622	Not Available	1334	Open in IMG/M
3300005764\|Ga0066903_101802010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1169	Open in IMG/M
3300005764\|Ga0066903_101877088	Not Available	1147	Open in IMG/M
3300005764\|Ga0066903_103540176	Not Available	841	Open in IMG/M
3300005764\|Ga0066903_106071303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300005764\|Ga0066903_107948556	Not Available	544	Open in IMG/M
3300005764\|Ga0066903_109118153	Not Available	501	Open in IMG/M
3300006031\|Ga0066651_10697922	Not Available	545	Open in IMG/M
3300009792\|Ga0126374_10331013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1036	Open in IMG/M
3300009792\|Ga0126374_11038373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300009792\|Ga0126374_11587345	Not Available	540	Open in IMG/M
3300010048\|Ga0126373_10853608	Not Available	974	Open in IMG/M
3300010048\|Ga0126373_11687830	Not Available	698	Open in IMG/M
3300010048\|Ga0126373_12174116	Not Available	616	Open in IMG/M
3300010048\|Ga0126373_12366891	Not Available	591	Open in IMG/M
3300010358\|Ga0126370_10962025	Not Available	776	Open in IMG/M
3300010361\|Ga0126378_10302434	Not Available	1703	Open in IMG/M
3300010361\|Ga0126378_12137377	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300010361\|Ga0126378_13326249	Not Available	511	Open in IMG/M
3300010376\|Ga0126381_100433083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1840	Open in IMG/M
3300010376\|Ga0126381_100605986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1558	Open in IMG/M
3300010376\|Ga0126381_100631959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1526	Open in IMG/M
3300010376\|Ga0126381_101891141	Not Available	861	Open in IMG/M
3300010376\|Ga0126381_102462304	Not Available	746	Open in IMG/M
3300010376\|Ga0126381_103567096	Not Available	610	Open in IMG/M
3300010376\|Ga0126381_103728486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	596	Open in IMG/M
3300010398\|Ga0126383_11350211	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300010868\|Ga0124844_1113697	Not Available	1032	Open in IMG/M
3300010868\|Ga0124844_1116040	Not Available	1021	Open in IMG/M
3300012971\|Ga0126369_10319946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1561	Open in IMG/M
3300012971\|Ga0126369_11442783	Not Available	778	Open in IMG/M
3300012971\|Ga0126369_12318124	Not Available	623	Open in IMG/M
3300012971\|Ga0126369_12407168	Not Available	612	Open in IMG/M
3300012971\|Ga0126369_13130411	Not Available	542	Open in IMG/M
3300016294\|Ga0182041_10274472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1385	Open in IMG/M
3300016319\|Ga0182033_10949413	Not Available	763	Open in IMG/M
3300016319\|Ga0182033_11062520	Not Available	722	Open in IMG/M
3300016319\|Ga0182033_11116927	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300016319\|Ga0182033_11358377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	639	Open in IMG/M
3300016357\|Ga0182032_11203673	Not Available	652	Open in IMG/M
3300016404\|Ga0182037_10736321	Not Available	846	Open in IMG/M
3300016445\|Ga0182038_10739995	Not Available	859	Open in IMG/M
3300016445\|Ga0182038_10868471	Not Available	794	Open in IMG/M
3300016445\|Ga0182038_12111381	Not Available	511	Open in IMG/M
3300017994\|Ga0187822_10169513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300018433\|Ga0066667_10680619	Not Available	862	Open in IMG/M
3300018433\|Ga0066667_12297563	Not Available	505	Open in IMG/M
3300021560\|Ga0126371_10185115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2169	Open in IMG/M
3300021560\|Ga0126371_10267976	Not Available	1827	Open in IMG/M
3300021560\|Ga0126371_10418305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1484	Open in IMG/M
3300021560\|Ga0126371_12802076	Not Available	591	Open in IMG/M
3300027874\|Ga0209465_10382214	Not Available	705	Open in IMG/M
3300031545\|Ga0318541_10313712	Not Available	875	Open in IMG/M
3300031545\|Ga0318541_10815993	Not Available	520	Open in IMG/M
3300031573\|Ga0310915_10183744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1457	Open in IMG/M
3300031680\|Ga0318574_10503117	Not Available	710	Open in IMG/M
3300031719\|Ga0306917_10412652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	1055	Open in IMG/M
3300031719\|Ga0306917_10670166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300031744\|Ga0306918_10199534	All Organisms → cellular organisms → Bacteria → Proteobacteria	1507	Open in IMG/M
3300031744\|Ga0306918_10223482	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300031744\|Ga0306918_10254146	Not Available	1342	Open in IMG/M
3300031744\|Ga0306918_10845100	Not Available	714	Open in IMG/M
3300031770\|Ga0318521_10962761	Not Available	523	Open in IMG/M
3300031845\|Ga0318511_10554857	Not Available	534	Open in IMG/M
3300031879\|Ga0306919_10101796	Not Available	2022	Open in IMG/M
3300031890\|Ga0306925_10058359	Not Available	4038	Open in IMG/M
3300031910\|Ga0306923_12307914	Not Available	536	Open in IMG/M
3300031912\|Ga0306921_10218069	Not Available	2236	Open in IMG/M
3300031912\|Ga0306921_10289137	All Organisms → cellular organisms → Bacteria → Proteobacteria	1919	Open in IMG/M
3300031946\|Ga0310910_10218814	Not Available	1481	Open in IMG/M
3300031947\|Ga0310909_10019339	All Organisms → cellular organisms → Bacteria	4878	Open in IMG/M
3300032001\|Ga0306922_10115411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2852	Open in IMG/M
3300032001\|Ga0306922_10148479	Not Available	2505	Open in IMG/M
3300032001\|Ga0306922_10501140	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300032042\|Ga0318545_10228290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	668	Open in IMG/M
3300032044\|Ga0318558_10642744	Not Available	530	Open in IMG/M
3300032059\|Ga0318533_10211889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1391	Open in IMG/M
3300032064\|Ga0318510_10394245	Not Available	589	Open in IMG/M
3300032076\|Ga0306924_10228004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2139	Open in IMG/M
3300032076\|Ga0306924_11402693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300032076\|Ga0306924_12437830	Not Available	526	Open in IMG/M
3300032076\|Ga0306924_12463495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300032261\|Ga0306920_100140116	All Organisms → cellular organisms → Bacteria	3600	Open in IMG/M
3300032261\|Ga0306920_101063648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1175	Open in IMG/M
3300032261\|Ga0306920_101068524	Not Available	1172	Open in IMG/M
3300032261\|Ga0306920_101715772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium olei	889	Open in IMG/M
3300032261\|Ga0306920_104214801	Not Available	518	Open in IMG/M
3300032261\|Ga0306920_104424204	Not Available	503	Open in IMG/M
3300033289\|Ga0310914_10965070	Not Available	752	Open in IMG/M
3300033290\|Ga0318519_10309821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300033290\|Ga0318519_10698099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	620	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.04%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.04%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.92%
Loam	Environmental → Terrestrial → Soil → Loam	22.12%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	22.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	22.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1006791241	3300005332	Tropical Forest Soil	MRAFAGTTKERATKAIMLRIANDYDRLARHADARTGNRTNK*
Ga0066388_1008566032	3300005332	Tropical Forest Soil	MRTISETMKERATKAIMLRIADDYDKLAKRAEFRTGKRNNN*
Ga0066388_1009396402	3300005332	Tropical Forest Soil	RQRAAEMRTLAETMNERATKAIMLRIANDYDRLARRAEIRAGNTTNNN*
Ga0066388_1015108542	3300005332	Tropical Forest Soil	MRAVAGTIKERATKAIMLRIANDYDRLARRADARTGNRTSE*
Ga0066388_1017940861	3300005332	Tropical Forest Soil	HWRQRAQEMRALAGTMKARATKAIMLRIANDYDRLARHAEARTGSGTISK*
Ga0066388_1039918662	3300005332	Tropical Forest Soil	MRALAEVMKHRATKAIMRRIADDYDKLAHRAEVRTGNKAINK*
Ga0066388_1043538241	3300005332	Tropical Forest Soil	MRTLAEIMKEPATKAIMLRIADDYDKLAKRAEIRTGKRTN*
Ga0066388_1057613201	3300005332	Tropical Forest Soil	MRTLAETMKEQATKAIMLRIADDYDRLARRAEIRTGNTA*
Ga0066388_1061413881	3300005332	Tropical Forest Soil	MRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTPTSK*
Ga0066388_1084926482	3300005332	Tropical Forest Soil	MRTIAETMSEQATKLIMLRIADDYDKLARRAEIRTGNRTTTNK*
Ga0066903_1001196684	3300005764	Tropical Forest Soil	GEEMRTLADTMKDARTKAIMLRIADDYDKLADRAEVRTGKRTTHN*
Ga0066903_1001520092	3300005764	Tropical Forest Soil	MRTLADTMKDARTKAIMLRIADDYDKLADRAEVRTGKRRTHN*
Ga0066903_1001944677	3300005764	Tropical Forest Soil	MRTLAGTMKEQATKAIMLRIADDYDRLARRAEIRTGNTA*
Ga0066903_1013526222	3300005764	Tropical Forest Soil	MRTFAGTMKEPATKAIMLRIGDDCDKLAKRAEIRTGNRTTTNK*
Ga0066903_1018020102	3300005764	Tropical Forest Soil	MRTIAETMNEQATKAIMLRIADDYDKLAKRAEIRTGNRTT
Ga0066903_1018770884	3300005764	Tropical Forest Soil	MRTLADGMKDGATKAIMLRIADDYDKLAKRAEVRTGNKAINK*
Ga0066903_1035401761	3300005764	Tropical Forest Soil	MRTLAGTMKEPATKAIMLRIADEYEKLAKRAEIRTGTRTTIR*
Ga0066903_1060713031	3300005764	Tropical Forest Soil	MRTLAETMKERATKAIMLRIANDYDRLARRAEIRTGNTTNNK*
Ga0066903_1079485562	3300005764	Tropical Forest Soil	MRTLAETMKERATKAIMLRIANDYDRLARRAEIRKPAGDSTDNN*
Ga0066903_1091181532	3300005764	Tropical Forest Soil	RTLAETMNERATKAIMLRIANDYDRLARRAEIRTNDK*
Ga0066651_106979222	3300006031	Soil	LAETMKEPATKAIMLRIADDYDKLAERAEIRTGARTNNK*
Ga0126374_103310131	3300009792	Tropical Forest Soil	QRAAEMRTLAETMNERATKAIMLRIANDYDRLARRAEIRAGNTTNNN*
Ga0126374_110383732	3300009792	Tropical Forest Soil	MRTIAETMKERATKAIMLRIADDYDKLAKRAEFRTGKRNNN*
Ga0126374_115873452	3300009792	Tropical Forest Soil	MRALAGTIKERATKAIVLRIANDYDRLARHADAEIGNRTNK*
Ga0126373_108536083	3300010048	Tropical Forest Soil	EEMRALAGTIKERATKAIMLRIANDYDRLARHADARTDNRTST*
Ga0126373_116878301	3300010048	Tropical Forest Soil	MRTLAETMKDQATKAIMFRIADDYDKLAKRAEIRTGNK*
Ga0126373_121741161	3300010048	Tropical Forest Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADAEIGNRTNK*
Ga0126373_123668912	3300010048	Tropical Forest Soil	MRAVAGTIKERATKAIMLRIANDYDRLARRADARTGNRTNK*
Ga0126370_109620251	3300010358	Tropical Forest Soil	PNHWRQRAAEMRTLAETMNERATKPIMLRIANDYDRLARRAEIRTNNK*
Ga0126378_103024341	3300010361	Tropical Forest Soil	WRQRAAEMRTLAETMNERATKAIMLRIANDYDRLARRAEIRTNNK*
Ga0126378_121373771	3300010361	Tropical Forest Soil	AAEMRTLAETMNERATKAIMLRIANDYDRLARRAELRTHNK*
Ga0126378_133262491	3300010361	Tropical Forest Soil	KERATKAIMLRIANDYDRLARHAEARSSSGINSK*
Ga0126381_1004330833	3300010376	Tropical Forest Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADARTGNITNK*
Ga0126381_1006059863	3300010376	Tropical Forest Soil	WRQRAAEMRTLAETMNERATKAIMLRIANDYDRLARRAEIRAGNTTNNN*
Ga0126381_1006319593	3300010376	Tropical Forest Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADAEIGNRT
Ga0126381_1018911411	3300010376	Tropical Forest Soil	MRAVAGTIKERATKAIMLRIANDYDRLARHADARTGNRTNK*
Ga0126381_1024623041	3300010376	Tropical Forest Soil	TRQIMLRIADDYDKLAERAEIRTGNRTTYEQIVSLK*
Ga0126381_1035670962	3300010376	Tropical Forest Soil	MRTLAETMKERATKAIMLRIANDYDRLGRRAENRTNND*
Ga0126381_1037284861	3300010376	Tropical Forest Soil	NHWRQRAAEMRTLAETMNERATKAIMLRIANDYDRLARRAEPRTHNK*
Ga0126383_113502112	3300010398	Tropical Forest Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADARTGNRTNK*
Ga0124844_11136971	3300010868	Tropical Forest Soil	MRTIVETMNGRPTREIMLRIADDYDNYDKLAERAEIRTGKRTTTNK*
Ga0124844_11160401	3300010868	Tropical Forest Soil	LAAAKRGNALRTIVETMNERATRVIMLRIADDYDKLAERAEIRTGKRTTTNK*
Ga0126369_103199461	3300012971	Tropical Forest Soil	TMNERATKAIMLRIANDYDRLARRAEIRAGNTTNNN*
Ga0126369_114427831	3300012971	Tropical Forest Soil	RTLAGIMKERVTRQIMLRIADDYDKLAERAEIRTGNRTTTNK*
Ga0126369_123181241	3300012971	Tropical Forest Soil	MRTLADTMKDARTKAIMLRIADDYDKLADRAEVRTGKRTTHN*
Ga0126369_124071683	3300012971	Tropical Forest Soil	TLAGIMKERVTRQIMLRIADDYDKLAERAEIRTGNRTTTNK*
Ga0126369_131304111	3300012971	Tropical Forest Soil	LAETMNERATKAIMLRIANDYDRLARRAEIRTGNRTTNE*
Ga0182041_102744722	3300016294	Soil	MRTLAGTIKERATKAIMLRIANDYDRLARHAEARTGSGTNSE
Ga0182033_109494131	3300016319	Soil	MRTLAETMNERATKAIMLRIANDYDRLARRAEIRTNNK
Ga0182033_110625202	3300016319	Soil	RTLAETMNERATKAIMLRIANDYDRLAGRAEIRTNNK
Ga0182033_111169271	3300016319	Soil	MRAVAGTIKERATKAIMLRIANDYDRLARHAEARSGNINN
Ga0182033_113583771	3300016319	Soil	QRAAEIRTLAETMNERATKAIMLRIANDYDRLARRAEIRTNNK
Ga0182032_112036731	3300016357	Soil	RGEEMRALAGTIKERATKAITLRIANDYDRLTRHADARTDNRAST
Ga0182037_107363211	3300016404	Soil	TIKERATKAIMLRIANDYDRLARHADALTGKRTNK
Ga0182038_107399951	3300016445	Soil	ETMNERATKAIMLRVANDYDRLARRAEIRTGNRTTNE
Ga0182038_108684711	3300016445	Soil	RAAEMRTLAEMMNERATKAIMQRIANDYDRLARCAEIRTNNK
Ga0182038_121113811	3300016445	Soil	LAGTMNEQATKAIMLRIADDYDKLARRAEIRTGDGTTTDK
Ga0187822_101695132	3300017994	Freshwater Sediment	MRTLADGVKDRETKAIMLRIADDYDNLAEQAEVRTGNKAKNK
Ga0066667_106806191	3300018433	Grasslands Soil	EEMRTLAETMKEPATKAIMLRIADDYDKLAERAEIRTGARTNNK
Ga0066667_122975631	3300018433	Grasslands Soil	MRTLAETMKEPATKAIMLRIADDYDKLAKRAAIRTGKTNNY
Ga0126371_101851152	3300021560	Tropical Forest Soil	MRTIAETMKERATKAIMLRIADDYDKLAKRAEFRTGKRNNN
Ga0126371_102679765	3300021560	Tropical Forest Soil	LAGTMKEQATKAIMLRIADDYDRLARRAEIRTGNTA
Ga0126371_104183053	3300021560	Tropical Forest Soil	LAERATKAIMLRIANDFDRLARRAEIRAGNTTNNN
Ga0126371_128020762	3300021560	Tropical Forest Soil	RTLADTMKDARTKAIMLRIADDYDKLAERAEVRTGKGTAKE
Ga0209465_103822141	3300027874	Tropical Forest Soil	WRQRGEEMRALAGTIKERATKAIMLRIANDYDRLARHADAEIGNRTNK
Ga0318541_103137122	3300031545	Soil	MRALAGTIKERATKAIMLRIANDYDRLARHAEARTGSGTNSE
Ga0318541_108159932	3300031545	Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADARTGNRTNK
Ga0310915_101837441	3300031573	Soil	EMRALAGTIKERATKAIMLRIANDYDRLARHAEARTGSGTNSE
Ga0318574_105031171	3300031680	Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADARTGNRT
Ga0306917_104126522	3300031719	Soil	MRAVAGTIKERATKAIMLRIANDYDRLARHADARTGKKQTNK
Ga0306917_106701663	3300031719	Soil	NHWRQRAAEMRTLAETMNERATKAIMLRIANDYDRLAKRAEIRANNK
Ga0306918_101995343	3300031744	Soil	AEIRTLAETMNERATKAIMLRIANDYDRLARRAEIRTNDK
Ga0306918_102234823	3300031744	Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADART
Ga0306918_102541463	3300031744	Soil	MRVLAGTIKERATKAIMLRIANDYDRLARHAGARTGNRTNK
Ga0306918_108451001	3300031744	Soil	GEEMRALAGTIKERATKAIMLRIANDYDRLARHADARTGNITNK
Ga0318521_109627611	3300031770	Soil	VRTLAETMKERATKAIMLRIADCYDKFAKRAEIRGNRTTTTNK
Ga0318511_105548571	3300031845	Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADARTDNRT
Ga0306919_101017961	3300031879	Soil	RTLAETMNERATKAIMLRIANDYDRLARRAEIRTNNK
Ga0306925_1005835910	3300031890	Soil	MRVLAGTIKERATKAIMLRIANDYDRLARHADARTGNRTNK
Ga0306923_123079142	3300031910	Soil	WRQRAAEMRTLAETMNERATKAIMLRIANDYDRLARRAEIRTNNK
Ga0306921_102180693	3300031912	Soil	MRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTTTHK
Ga0306921_102891371	3300031912	Soil	TLAETMNERATKAIMLRIANDYDRLARRAEIRTNDK
Ga0310910_102188141	3300031946	Soil	MRTLAETMNERATKAIMLRIANDYDRLARRAEIRTGNRTTNE
Ga0310909_100193397	3300031947	Soil	MRALAGTIKERATKAIMLRIANDYDRLARHVDARTGNKTNK
Ga0306922_101154111	3300032001	Soil	MRALAGTIKERATKVIMLRIANDYDRLARHGEARTGSGTNSE
Ga0306922_101484794	3300032001	Soil	MRTLAETMKEQATKAIMLGIADDYDKLAKHAEIRTGNRTTTHK
Ga0306922_105011401	3300032001	Soil	LAETMNERATKAIMLRIANDYDRLARRAEIRTNDK
Ga0318545_102282901	3300032042	Soil	RALAGTIKERATKAIMLRIANDYDRLARHADARTGNITNK
Ga0318558_106427441	3300032044	Soil	MRTLAETMNERATKAIMLRIANDYDRLAKRAEIRANNK
Ga0318533_102118892	3300032059	Soil	MTQSWRQRGEEMRALAGTIKERATKAIMLRIANDYDRLARHAEARTGSGTNSE
Ga0318510_103942451	3300032064	Soil	QRGEEMRTLAETMKEQATKAIMLRIADDYDKLAKHAEIRTGNRTTTHK
Ga0306924_102280042	3300032076	Soil	QSWRQRGEEMRALAGTIKERATKAIMLRIANDYDRLARHAEARTGSGTNSE
Ga0306924_114026931	3300032076	Soil	MRTLAETMKERETKAIMLRIAHDYDRLPRRAEIRTGNTTSNNK
Ga0306924_124378301	3300032076	Soil	MRAVAGTIKERATKAIMLRIANDYDRLARHADARTGNKTNK
Ga0306924_124634951	3300032076	Soil	MRTLAETMKERATKSIMLRIAHDYDRLTKRAEILTGNTTNNK
Ga0306920_1001401166	3300032261	Soil	MRALAGTIKERATKAIMLRIANDYDRLARHADARTGNITNK
Ga0306920_1010636481	3300032261	Soil	MRTLAEIMKEQATRAIMLRIADDYDELARRAEIRTGDTSN
Ga0306920_1010685243	3300032261	Soil	AVAGTIKERATKAIMLRIANDYDRLARHADARTGNKTNK
Ga0306920_1017157721	3300032261	Soil	TLAETMNERATKAIMLRIANDYDRLARRAEIRTNNK
Ga0306920_1042148012	3300032261	Soil	MRAVAGTIKERATKAIMLRIANDYDRLARHADARTGKKQTN
Ga0306920_1044242041	3300032261	Soil	EEMRALAGTIKERATKAIMLRIANDYDRLARHADARTGNRTNQ
Ga0310914_109650703	3300033289	Soil	MRTLAGTMNEQATKAIMLRIADDYDKLARRAEIRTGDGTTTDK
Ga0318519_103098213	3300033290	Soil	WRQRGEEMRALAGTIKERATKAIMLRIANDYDRLARHAEARTGSGTNSE
Ga0318519_106980991	3300033290	Soil	LAETMNERATKAIMLRIANDYDRLARRAEIRTNNK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096427

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences