Scaffold Ga0306925_10056441

Overview

Basic Information

• Taxon OID: 3300031890
• Scaffold ID: Ga0306925_10056441
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4104
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010884	Metagenome / Metatranscriptome	298	Y
F063197	Metagenome / Metatranscriptome	130	Y
F068739	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306925_100564411	F068739	N/A	KLLAAELRQEAARIAHRNTLRKENAGNTTQLRGVLVNLLQHQ
Ga0306925_100564415	F063197	AGGAGG	MTSTTEDAVPAARSPRIDRGTDTTTRTRRSRTGSDEENDGNARYFLAKTNGTDGTPALDREVANEGEALVEGLRLGVTFYMVQEFRAVPDFSGKKPLLNKEAVKGK
Ga0306925_100564416	F010884	AGGAGG	MVKQRFRVLFRRWFFTVAKVCGPVLLYELFVLVRQHFQYVPLGISDLLEGALLAFLLTALLCWLWALGEWMWSRLRRLRGFLSELRQCSRSYWNPEAVRTNKA