Scaffold Ga0315285_10185657

Overview

Basic Information

• Taxon OID: 3300031885
• Scaffold ID: Ga0315285_10185657
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1678
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F019290	Metagenome	230	Y
F045612	Metagenome	152	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315285_101856571	F045612	N/A	GMMHQYTYEDFMSSLKWLEAEGYIEKFYDTNGDLCVRVCEGAEDCEV
Ga0315285_101856573	F006138	GAGG	MPAVTVGNAGLVFGLSAETIGLVQSFSETRNIEKNEIRSASGDISGIGYYNPTTAYSLSVAITGANTGLTVGGAFASLANATTVGTCRIDSIAINKTNTGFVTIDISATGYPNVS
Ga0315285_101856574	F019290	N/A	MEGSSYWGTTNIKVASAVAAFGGTLRQTDPVTHIVREDGSKQITFWFNSGGTGSIAKKEMESKWSEMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPTNAKPELKRAILKAI
Ga0315285_101856575	F090073	AGG	MSDILEEELSASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSIYFIWSFLYLHLLLHKNKREAIKLAWDKDAFRERVLDWVVDKTEEDREIATNIVSKIIEEAGKARVSVVQSGFEGQASGNE