NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1007475

Scaffold Ga0308404_1007475


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1007475 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2721
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F067304Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10074752F067304N/AMRCDQRLMPPLCAQRCEMLRDALKRQTVKRVGRAVVDVPTQHQFGVRCGQRREVEQT
Ga0308404_10074753F004791AGGAGGMTKPAEIYDIDAIRVDRSALSIRDAASVLNNELTAPVVARLVRKAIGDQADQFPLRALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHQFLDASERKIAFPPVAATLLTKAYGEDILNEPYAAAALLLKKIFDAIGDEGNE
Ga0308404_10074754F005302AGGAGGMAHSGVLAGLFAGNFAVEISTNNTTWTAVSNATVKVDDVELNRPSGEAFVGGSSDYATITIGKREPVEITLTFLYNEAANSATNTIFDQFQSTTPRLGVRWSPRGLTSGARAYGTSNDGGATFGLGVITNVTLSTLDPGDPEPYVAMVTVRTPSLRQYALGANPTDLS
Ga0308404_10074755F002970GGAGMSFSTLVDIVELLAGLVVQFDGNAVPVQRLTTQPNWADAAELPVRIIPAIGGVRLVEGGVYTPTRSMRAVWEIDDLLLVRDVGMGRGVADTATPLVAYIEQYVELLRFAWFARGDVQLLNVSGIIDTIRYGERAYEGVVMTTRFAHLVRAPSP
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