Scaffold Ga0308404_1001168

Overview

Basic Information

• Taxon OID: 3300031878
• Scaffold ID: Ga0308404_1001168
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7859
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002978	Metagenome / Metatranscriptome	516	Y
F008135	Metagenome / Metatranscriptome	338	Y
F015735	Metagenome / Metatranscriptome	252	Y
F066811	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308404_100116813	F008135	AGGAGG	MRAVIDPRTERVLAEAGAGIARVLDDRQRRAVALAIEACWYIVAALPPDGSVTFGDVVRLLRWFARGFNEDVEADDAGD
Ga0308404_100116815	F002372	AGGGGG	MPTRREDVLWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLSVAEGV
Ga0308404_100116816	F015735	GAGG	MVVYHHWSVEWHPRDNPPHGLPRVVCIARRAVSDPWCGPGPFPADVDRAARFWNLVASGGARDHGAGYEVVWRLSVVVDDADGDAPPDGAWSDDLVYRARRRLLRWIMRSQCPIPALADHFADEHFRDHPAYFGLLEPGA
Ga0308404_10011684	F066811	AGGAGG	MQFNNPPAFTAPSMNDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0308404_10011686	F000855	AGGAG	MDWLEDFFSKVVSWFDERAASIYNAVVAFINVLVDIWNGWMDTLLRPAQAMPSIPALRWVVDWLGGVADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308404_10011687	F001381	GAG	MHYFVATLYVLCWLALAAGAALWLPLWALPAALVQLAVAYVMVRAVWLTVARDD
Ga0308404_10011688	F000642	GAG	MQTISIALAVCACAAAIWYMRRRDAGAGRVRGWLLLHDDLGGWRVLSAVYGDAGIVADGVTYPASLPALRAGRELVWIARCESAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVSSLQALVAQILVLVGDK
Ga0308404_10011689	F002978	AGG	MRDWRVAIVPWADRRLWFLQARRGRRVVWGVVYDASDPDSVALARRAIATLRAAGADCSALPHPLPGTTPPPGA