NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000862

Scaffold Ga0308404_1000862


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000862 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9191
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_100086210F001381GAGMQYVIATLYVLVWLALAAAAALWLPRWALPAALVQLAVAYVMLRAFWLTVARDD
Ga0308404_100086211F000855GAGGMDWLEDFWSKIVGWWDHTSANVYNGIVAFINSLVEIWNGWMDALLHPAQAMPSIPALRWVVDWLGGMADYTRLMYMLVDYVAYAAIVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308404_100086213F066811AGGAGGMEFNNQPQFNAPNMADILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0308404_10008622F002372AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVMYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVQEYRADPSLGGSDSWA
Ga0308404_10008623F002795GGAGGMPVTSGLVLRGMVAAYREFTSRKNGRVYRVVTVYGDLVVGEDVLCSIDGYDVFVDSPDYARGEVVSFPARLQFVRDASGRPVVRLYVDEGVR
Ga0308404_10008624F008135N/AMRAMNDPRAERVLTEAGASIARVLDARQRRAVALAIEVCWYIVAALPPDGSVTFGDVVRLLRWFARGFNVEADDAGD
Ga0308404_10008625F002229GGAGGMVTLLTFDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVVCNRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRALCGGCVEDEDEDEEE
Ga0308404_10008627F004024AGGAGGMYSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRER
Ga0308404_10008628F002978GAGMRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDAADPESVSLARRAIATLRAAGADCSALPASLPGTPPGAPGTSGA
Ga0308404_10008629F000642GGAGMQEMSVALALCAVGAAVWYMRRRDAGAGRVTGWLLLYDDVGGWRVLAASYGESGVVADGVTYPASLPAVRAGRELIWIARCDAAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQSLVAQILALVGK
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