Scaffold Ga0315314_1000019

Overview

Basic Information

• Taxon OID: 3300031877
• Scaffold ID: Ga0315314_1000019
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 288054
• Total Scaffold Genes: 314
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 254 (80.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052326	Metagenome	142	Y
F071876	Metagenome	121	Y
F082002	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315314_1000019159	F052326	GGAGG	LSSDVWQARIDLCVDKESRTYWIMLRLRNDFGDEKKHMSVLIPKAALSEALERASSLEEKGLHEKQEPTDLAETPDD
Ga0315314_1000019236	F082002	GGA	MQIEVLTREEIEKIIEEKLKKLVAEAEIWKKIAELESSTVKLRDDIARLSIKEPSLAESELVAAALIRDLAQRADLLEIRTALDSVTLKPKGYLVAQDFRAISEIVKKHGGSWSSERRMFAIRKRT
Ga0315314_100001930	F071876	N/A	MDPKQIVDTLFSVDKNIRYVGVVGPGPDYEIKASCMREGVKSLTREEKDREFIQVIPELILRMTEKLEDDLGRIRYSLLCFQKLTLMLFKTPEYVIVMSLEAGTFARPVFERIKPLLGLE