NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315314_1000019

Scaffold Ga0315314_1000019


Overview

Basic Information
Taxon OID3300031877 Open in IMG/M
Scaffold IDGa0315314_1000019 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)288054
Total Scaffold Genes314 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)254 (80.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052326Metagenome142Y
F071876Metagenome121Y
F082002Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0315314_1000019159F052326GGAGGLSSDVWQARIDLCVDKESRTYWIMLRLRNDFGDEKKHMSVLIPKAALSEALERASSLEEKGLHEKQEPTDLAETPDD
Ga0315314_1000019236F082002GGAMQIEVLTREEIEKIIEEKLKKLVAEAEIWKKIAELESSTVKLRDDIARLSIKEPSLAESELVAAALIRDLAQRADLLEIRTALDSVTLKPKGYLVAQDFRAISEIVKKHGGSWSSERRMFAIRKRT
Ga0315314_100001930F071876N/AMDPKQIVDTLFSVDKNIRYVGVVGPGPDYEIKASCMREGVKSLTREEKDREFIQVIPELILRMTEKLEDDLGRIRYSLLCFQKLTLMLFKTPEYVIVMSLEAGTFARPVFERIKPLLGLE

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