Scaffold Ga0308405_1001221

Overview

Basic Information

• Taxon OID: 3300031875
• Scaffold ID: Ga0308405_1001221
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13172
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006252	Metagenome / Metatranscriptome	377	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F019420	Metagenome / Metatranscriptome	229	Y
F081390	Metagenome / Metatranscriptome	114	Y
F093914	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308405_10012211	F093914	N/A	SDYATITVGKREPLEITLTFLYNEDTNSAANTIFDQFQSTSPRLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRRYTLGSSPTNLNPAP
Ga0308405_100122110	F014738	GGAGG	MKLDVLLLISAFALAFVHPNAAQVAASAVLLLLTVRIERGRQARKKKSAPVVH
Ga0308405_100122114	F019420	AGGGGG	MATYRDVIFWSSATDGDCKVTVIRARLLGMTIDLGNDDERPDKMTAFYEADGGGIIVYEVDCFEVDGRMIARWQRVASLEEVRRGYAAYLERLEL
Ga0308405_100122115	F006252	GAG	MKSFDEQAAFGLPYERLIAQAAALLLYPQRLDLALVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDAYRTTILPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERLVKVEEVHQPPRRSA
Ga0308405_10012213	F081390	N/A	MRCDQRLMPPFRAQRREMLRNAPERLTVKRVGRAVVNVPAQH
Ga0308405_10012216	F012577	AGGAG	MLVAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPTYARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVRNMTDMKNWKPVGEGIITNSGYDSRGDLWEYESVASSGNIVVQIRTKKAFTISNTTLFFLAYLFDQPQRYYKLENNERIFVHQVTSTGLADGVWVAPVNALVQTSTYQLILGAFTGLSTGGNLTAPNSFGWVIGVRASGNETTAGTTSVSFRAEINDLQFGSIDEEKLTIALNERGGCCTIHLPSASSVSLTKSDANLRDIIENADGNVVRYHRKRFLRDRPRPTIDFRTDSTLVWRFPETTRVVDISKAPNRIYGQYPGYWADYLTATTTIQSLETRRHLAKRFASVGEYDTKAIADTRRNETAVALDRQIAPLIIELDNSRYELMMREGVTVPNWAADVSDYAIVPGYYYRNAKITSRVITRERTTYTVSFNPDDFVTALR