NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326511_10142925

Scaffold Ga0326511_10142925


Overview

Basic Information
Taxon OID3300031867 Open in IMG/M
Scaffold IDGa0326511_10142925 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2233
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0326511_101429253F079361N/AMIYFTVAKNDCGYLIDSISKNYDILKSKFPDEKIYESDEPIVSIYVIKDQLHEVSK
Ga0326511_101429254F064301N/AMPKAKITSATVRKPTKVTPIWQIGIIFPNGNKIMKPKCTLNEIFLTYFLDLEKHLAKGYSAEELFELYKKTYTNKGIKVGINYIDSWGHKWTGKIAWPRENKFIEFLNTKLNEVHSES
Ga0326511_101429256F057035N/AMTEKEFLEKRTPIWLEGEDLHISRPSSKSDWSDMHAFLSKKYGYNWMFAIRGYYWPGSHVMLYMGDYECPNCTAYVAPYLFNYFPDIKYVGFGCNKGQVGEIWPPKIIIVRDMTCLSNDILNKQTEESV
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