NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326511_10100488

Scaffold Ga0326511_10100488


Overview

Basic Information
Taxon OID3300031867 Open in IMG/M
Scaffold IDGa0326511_10100488 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2623
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065282Metagenome / Metatranscriptome127Y
F092990Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0326511_101004885F092990GGAGGMSKSDQIALGRNQGLDLARRIVAQAQADGADPLKALDMEIRSRHIIGIAAKMTKSEWEKEFAAAMELAYKAAMVIAMAVLWGDFGWGGVKRLPKFCNAYLNYLMEIGRQNTSITELVDLLADKAGVHVDLAEKGFMADFRKAKGKDRIA
Ga0326511_101004886F065282GAGGMTEERHECKTYAEMLAVFREAKADGHTAWWNHDELMNGELIVYVRKDKKENENG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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