Scaffold Ga0315909_10256127

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10256127
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1339
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F026830	Metagenome / Metatranscriptome	196	Y
F028460	Metagenome / Metatranscriptome	191	Y
F040531	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_102561271	F028460	N/A	SEYGSPSNPPHRRAIHGKVSQLPALILTLGYDPSQGILKVAPVKNRFGAHTADGSKYAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV
Ga0315909_102561272	F006653	AGGAGG	MSDEQMSHKKEKPELTNKYRDNLKVDQLRAELDAIKVDLTNFVGALLQSGVVELVKDEEGNIIYKINKVVLVDESVQQD
Ga0315909_102561274	F026830	AGGA	MVKGETVMPVPEGNITTSEILIPVVEEVVEVSITEEEETDGKVEE
Ga0315909_102561276	F040531	AGG	MPAQDWSRVRKAGRFKGPIDANTIPIGAIVSHFGGEV