Scaffold Ga0315909_10186054

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10186054
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1663
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F066578	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101860541	F066578	N/A	STPKGVFSFDLMDVPEPEWEVGWMPATTEFSRNHKMEKLVGYLPIEEAIQL
Ga0315909_101860543	F013279	GGA	MNYDYKCPQCDSKLTIERSIHEEAKDPGCFVCHITMSRVYDAPGISFKGRGFYSTGG
Ga0315909_101860545	F003863	GGAGG	MESKQVSGMQAISYRNYRRARDRALVRLSHLYADEYRQLLVEERELDEQEGKKWVGVADNTRLTITTHTRANAVPDVAGRTDYDRENEGYNGGEA
Ga0315909_101860547	F000821	N/A	MNEEYLKAKFDLCLNQAEIDLQQEEIARAIKNLQRANLALSRIFNLEEEENE