Scaffold Ga0315909_10056463

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10056463
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3595
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100564631	F033779	N/A	VLLAAVSGCRTAQPILQSVIVKDTVIVTETKYLLDTLEVLKDTTIYQDKVRLQLKYIDRKVVVEAMCQPDTIRVTQTKLLTKQEPKKKSWESYVGMLAFILTFAYVIKRWVDKLTE
Ga0315909_100564633	F011218	N/A	MQYYTNPAKRRKIDFLLAECASLFANCGSSYAERQQAKYQEQSILAEIAKIDHHFAIQCGYLQQDN
Ga0315909_100564634	F009600	N/A	MWIPTTGQLKSYHVVVGKVPSLNAFYASKHWTVRAKAKDKHCAEVLQQLQEYDCLPIQHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKLEHDPDIHPDTAEITFTGLLVNQ
Ga0315909_100564635	F039112	N/A	MTLSLSQEVYSQTIMAQQAQIKALQDKVQELNARIEVLEQQAVLFI
Ga0315909_100564636	F015723	N/A	MAKIISITPKGQWQDLFKLELRFDNGDFGTAFAKSPTPSYAVGDEVDYTKNEKGTIKINKPFTGGGFSGGNGGSFANTSRVSGDERSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMNGNQSAATHQEHFASRNESPF
Ga0315909_100564638	F009202	N/A	MYPSEELHDLYIREKQLMLSGTAMWLAKQAAHKASGREVQDEMIDHLMNVHHADQLLQQFIDYRLFANRKLNEVMLANAQLRVNNEEMILEIERLQRIIEDNI