Scaffold Ga0315909_10048813

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10048813
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3936
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1004881310	F006618	AGGAG	MSKMKQHLEGQIVIAHSSEESTGWKRYIAFNYEGNEYELTLFWEEFSGYDTYWRVPDKTPAWVAEWDSEAHQGMSFEHYLDDLTWEMNK
Ga0315909_100488137	F006842	AGGAGG	MAYTPVICGDHLVPISECDCVNYLQELKTSAERLVQLTKQREQLINE
Ga0315909_100488138	F072283	AGGCGG	MNTMQDLIDAIKPILPNALVIDTDEGILIETNLELGLGGLLQPIEEVK