Scaffold Ga0315909_10045474

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10045474
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4110
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024318	Metagenome	206	Y
F029084	Metagenome / Metatranscriptome	189	Y
F036704	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100454741	F029084	N/A	RDTILLDFKPQISLFKASIPSEYGSTNISGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIIQKAKGIYIGAGVNSLIQPMAKVSYLDNKYLFQYGYEPVTKVHTLGVSKKLF
Ga0315909_1004547410	F024318	N/A	MSNYLYLGKFIKRPGDLAPKGVKSTYQNEKLPFNETFERLWQLANTKA
Ga0315909_100454742	F036704	GGA	MLSGQTIDWKSLGLEVKHEWSRRMVRVGDIQYVQELMHDIQIMGFYDNTTCLIKGDYKEIRSEILHLDQETDLE