Scaffold Ga0315909_10039822

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10039822
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4459
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F006885	Metagenome / Metatranscriptome	362	Y
F028423	Metagenome / Metatranscriptome	191	Y
F070870	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1003982210	F006885	GAG	MEYLLIIGLTLLIYWSIIKISNKKQMMFLGKNKYKQSYIYEMIKDVVPKKVFDKPKVITQSEKHIQKNMLKVVITEGKAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELSEMLSILDDLRQGVGPNDSGSTGNKRV
Ga0315909_1003982211	F028423	AGGGGG	MDNLEKNELIQLITFYKQKLSDTELESLKLQLEINRLNSMILSLSKQPEKKTK
Ga0315909_100398223	F070870	GGAG	MKKKTKILILVILSFLTTLSLWIASNLKELSDLDIFDIDEE
Ga0315909_100398225	F003688	N/A	MYTDAMRKAVHLITPPKGFGVEIIDNQHFITVKLDEKKFLHMGHDDKISALQYVVKLKKALEDCGAIVLVTREAVK