Scaffold Ga0315909_10017800

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10017800
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7246
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006744	Metagenome / Metatranscriptome	365	Y
F015208	Metagenome / Metatranscriptome	256	Y
F043940	Metagenome / Metatranscriptome	155	Y
F057310	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001780010	F015208	GGAG	MYKLTVAYDENPIHWTKEYKDELQAHEAFAEFNDWGFADEYSTVNLHTPSLKCYTKIFYREGRKVVTK
Ga0315909_1001780019	F043940	AGGA	MKTRFRVEIYDANKSNDVTIYSEQGVDKEYLTELVYSNLRNFDGAVKAYVFDNLKKKKITAVYVPVEIINSFKSKLPAKINLELI
Ga0315909_100178003	F057310	AGGA	MKITYSVWQGSLIKGSGFTASTMKEVMKTIDELNETKVSPKFEAFISKVEQETK
Ga0315909_100178004	F006744	AGGAG	MNLDEFKAHVLATRQASKSEALSVLSATITTTTNEKENN