Scaffold Ga0315909_10017407

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10017407
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7335
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F034898	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001740711	F024318	N/A	MKYLGKEIQRPNDLAPKGVRSTYQTEKLPFNETFERLWQLTNTKNLTK
Ga0315909_1001740717	F001775	N/A	MQDREKITIAIIAALIGFILAFVLFPRPEFETVYKTEIKTETDTVFVSQKDTIYVPKTKIKTEVLRDTVLIDFKPKISQFNASFPFEYGSTNVSGEVLGEVLKITATNDYKIPVVTNTITETKTETIIKKSKGIYLGANVNSLLQPSANVSYLDNKYLFSYQYQPLQRVHQIGVSKKLF
Ga0315909_100174074	F008073	N/A	MKEVIVKHLKKMEFVCGLKQFKEYKEEEALELIECLNELFKKFGWMTEQRVDYILQAGMRGQYGDFYHVNEKTVNGWITQYYQHHQSQIVMEIQNQNNKGKEPSAEEIAYWIEVGKNIFRENYQHAKDTGYCLDLAEWGVNWFNKFQEKGILKPWTFNVEEIEQDVRKELRLTKHWVEESTVGAKSKNKIWKLFILESIRENRNLDKLI
Ga0315909_100174076	F034898	N/A	MTKEEIVKELQFRATQKYLIYLALQEIMLDNYEDCTFLKDYDHDLTVKHKNIINSLKRNATKAFRFLEGYDEGEATIKQFHDFVKLFERIHEAIDRGGGVYTDCLAAVEQILNDNAEIQRTRSGANARPLA